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| Status |
Public on Mar 19, 2023 |
| Title |
Gene expression profiling shows that CYCLIN-DEPENDENT KINASE 8 (CDK8) promotes the expression of defense-related genes in a higher-order jaz (jazD) mutant |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The decuple jaz mutation (jazD) promotes defense responses while inhibiting growth. We used RNA-sequencing to query the the transcriptomes of wild-type Col-0, cdk8-1, jazD and jazD cdk8-1 plants. The data highlight how CDK8 contributes to the expression of growth- and defense-related genes in jazD.
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| Overall design |
Analysis of Col-0 (wildtype), cdk8-1, jazD, and jazD cdk8-1 (four genotypes), with three biological replicates per genotype - 12 total samples.
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| Contributor(s) |
Guo Q, Howe GA |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Mar 19, 2020 |
| Last update date |
Mar 19, 2023 |
| Contact name |
Qiang Guo |
| E-mail(s) |
guoqiang@msu.edu
|
| Organization name |
Michigan State University
|
| Department |
Plant Research Laboratories
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| Lab |
Gregg Howe
|
| Street address |
612 Wilson Rd
|
| City |
East Lansing |
| State/province |
MI |
| ZIP/Postal code |
48824 |
| Country |
USA |
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| Platforms (1) |
| GPL28290 |
DNBSEQ-G400 (Arabidopsis thaliana) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA613455 |
| SRA |
SRP253342 |
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