NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE147414 Query DataSets for GSE147414
Status Public on Mar 24, 2020
Title RNA-sequencing of dephostatin-treated Salmonella
Organism Salmonella enterica subsp. enterica serovar Typhimurium
Experiment type Expression profiling by high throughput sequencing
Summary We report the effect of dephostatin treatment on the Salmonella transcriptome. High-throughput sequencing was used to quantify transcript levels under different growth conditions.
 
Overall design Salmonella was grown in the presence of dephostatin and DMSO in SPI-2 inducing (LPM) and non-inducing (LB) media types. RNA was isolated and sequenced to quantify differential gene expression induced by dephostatin treatment.
 
Contributor(s) Tsai CN, MacNair CR, Cao MP, Perry JN, Magolan J, Brown ED, Coombes BK
Citation(s) 32413287
Submission date Mar 23, 2020
Last update date Jun 23, 2020
Contact name Brian Coombes
E-mail(s) coombes@mcmaster.ca
Organization name McMaster University
Department Biochemistry
Lab Coombes
Street address MDCL 2108, 1200 Main St W, McMaster University
City Hamilton
State/province ON
ZIP/Postal code L8N 4L8
Country Canada
 
Platforms (1)
GPL17070 Illumina HiSeq 2000 (Salmonella enterica subsp. enterica serovar Typhimurium)
Samples (12)
GSM4430235 LB_DMSO_Rep1
GSM4430236 LB_DMSO_Rep2
GSM4430237 LB_DMSO_Rep3
Relations
BioProject PRJNA614513
SRA SRP253755

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE147414_RAW.tar 900.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap