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Series GSE147990 Query DataSets for GSE147990
Status Public on Nov 16, 2020
Title SFR KO mice germinal center B cell RNA sequencing
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary WT-AID-GFP+ and SFR KO-AID-GFP+ mice were immunized with NP(18)OVA+ alum, on Day 9, germinal center B cells (AID-GFP+) were sorted for total RNA
 
Overall design Examination of wild-type vs. SFR KO germinal center B cell RNA profile

The SFR KO mice are described at: https://rupress.org/jem/article/213/10/2187/54640/Deletion-of-Slam-locus-in-mice-reveals-inhibitory
The deletion spans from the intron 1 of Cd244 to exon 8 of Slamf6:
-Cd244
-Ly9
-Slamf7
-Cd48
-Slamf1
-Cd84
-Slamf6
 
Contributor(s) Zhong M, Veillette A
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 02, 2020
Last update date Nov 16, 2020
Contact name André Veillette
E-mail(s) Andre.Veillette@ircm.qc.ca
Phone 5149875605
Organization name IRCM
Department Molecular Oncology
Lab Veillette
Street address 110 Des Pins Ouest Rm1065
City Montreal
State/province QC
ZIP/Postal code H2W 1R7
Country Canada
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (6)
GSM4451503 m_15733_wt
GSM4451504 m_15734_wt
GSM4451505 m_15736_wt
Relations
BioProject PRJNA622768
SRA SRP255023

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE147990_ko_vs_wt_counts_normalized_relative_to_library_size_last.tsv.gz 2.8 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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