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Series GSE148337 Query DataSets for GSE148337
Status Public on Apr 09, 2020
Title Regulation of the transcriptional response to mechanical trauma by vhp-1
Organism Caenorhabditis elegans
Experiment type Expression profiling by high throughput sequencing
Summary Mechanical stress by blunt force trauma elicits a distinct and reproducible transcriptional response in C. elegans. Vhp-1, a MAPK phosphatase, regulates a significant portion of these stress-inducible transcripts.
 
Overall design mRNA profiling from whole worms: 1 hour following stress and with or without vhp-1 RNAi.
 
Contributor(s) Douglas P, Egge N
Citation(s) 33674585
Submission date Apr 08, 2020
Last update date Apr 06, 2021
Contact name Peter M Douglas
Organization name UT Southwestern Medical Center
Department Molecular Biology
Street address 6000 Harry Hines Blvd
City Dallas
State/province TX
ZIP/Postal code 75390
Country USA
 
Platforms (1)
GPL18245 Illumina HiSeq 2500 (Caenorhabditis elegans)
Samples (10)
GSM4460569 EV uninjured, bio rep 1
GSM4460570 EV uninjured, bio rep 2
GSM4460571 EV uninjured, bio rep 3
Relations
BioProject PRJNA623920
SRA SRP255758

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE148337_RNAseq_Processed_matrix_file.xlsx 14.6 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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