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Series GSE148396 Query DataSets for GSE148396
Status Public on Sep 23, 2021
Title Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Contributor(s) Kottyan LC, Weirauch MT
Citation(s) 34799401
NIH grant(s)
Grant ID Grant title Affiliation Name
R01 HG010730 Virus-driven human gene misregulation in disease CHILDREN'S HOSPITAL MEDICAL CENTER Matthew Tyson Weirauch
R01 NS099068 Binding of Epstein Barr Virus EBNA2 unifies multiple sclerosis genetic mechanisms CHILDREN'S HOSPITAL MEDICAL CENTER Matthew Tyson Weirauch
R01 GM055479 Biochemical and Computational Analysis of Notch signal transduction CHILDREN'S HOSPITAL MEDICAL CENTER Matthew Tyson Weirauch
R01 AR073228 Transcription Factor Genetics in Lupus CHILDREN'S HOSPITAL MEDICAL CENTER Leah Claire Kottyan
R01 AR073228 Transcription Factor Genetics in Lupus CHILDREN'S HOSPITAL MEDICAL CENTER Matthew Tyson Weirauch
R01 DK107502 Mechanisms of genetic risk at 2p23 in Eosinophilic Esophagitis CHILDREN'S HOSPITAL MEDICAL CENTER Leah Claire Kottyan
P30 AR070549 Cincinnati Rheumatic Diseases Resource Center CHILDREN'S HOSPITAL MEDICAL CENTER SUSAN D THOMPSON
U01 AI130830 Gene Regulation as a Foundation for Autoimmune Disease Prevention CHILDREN'S HOSPITAL MEDICAL CENTER Matthew Tyson Weirauch
U01 HG008666 Better Outcomes for Children: Promoting Excellence in Healthcare Genomics to Inform Policy CHILDREN'S HOSPITAL MEDICAL CENTER John Barker Harley
R01 AI024717 Genetic Linkage in Lupus CHILDREN'S HOSPITAL MEDICAL CENTER Leah Claire Kottyan
R01 AI024717 Genetic Linkage in Lupus CHILDREN'S HOSPITAL MEDICAL CENTER Matthew Tyson Weirauch
R01 AI148276 Genomics of Inflammatory Bowel Disease CHILDREN'S HOSPITAL MEDICAL CENTER Leah Claire Kottyan
I01 BX001834 Lupus Association with Signal Transducer and Activator of Transcription 4 (STAT4) CINCINNATI VA MEDICAL CENTER RESEARCH John Barker Harley
Submission date Apr 09, 2020
Last update date Oct 23, 2023
Contact name Matthew Weirauch
E-mail(s) Matthew.Weirauch@cchmc.org
Organization name Cincinnati Children's Hospital Medical Center
Department Center for Autoimmune Genomics and Etiology (CAGE)
Street address 3333 Burnet Avenue
City Cincinnati
State/province Ohio
ZIP/Postal code 45229-3026
Country USA
 
Platforms (5)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (29)
GSM5360535 EBNA2 ChIP-seq: EBNA2+ (B95.8) EBV infected Ramos B cells replicate 1
GSM5360536 EBNA2 ChIP-seq: EBNA2+ (B95.8) EBV infected Ramos B cells replicate 2
GSM5360537 EBNA2 ChIP-seq: GM12878 (B-Lymphocyte) LCL replicate 1
This SuperSeries is composed of the following SubSeries:
GSE176232 Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci [ChIP-seq]
GSE176421 Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci [ATAC-seq]
GSE177046 Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci [RNA-seq]
Relations
BioProject PRJNA624139

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE148396_RAW.tar 44.1 Gb (http)(custom) TAR (of BIM, BW, HIC, IDAT, NARROWPEAK, TSV, TXT)
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