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Series GSE148398 Query DataSets for GSE148398
Status Public on Apr 01, 2022
Title Gene expression of invasive lobular carcinoma tumor epithelium and tumor stroma isolated by laser-capture microdissection
Organism Homo sapiens
Experiment type Expression profiling by array
Summary We used laser-capture microdissection (LCM) to separate tumor epithelium (TE) from stroma (TS) in 23 ILC samples. Gene expression analysis was used to identify genes that are enriched in the stroma of ILC, but not IDC or normal breast.
Overall design Gene expression data was generated for a total of 22 TE and 18 TS samples, including 17 pairs of TE and TS samples from the same patients.
Contributor(s) Gómez-Cuadrado L, Sims AH, Brunton VG, Park M
Citation(s) 35205651
Submission date Apr 09, 2020
Last update date Apr 01, 2022
Contact name Andrew H Sims
Organization name University of Edinburgh
Department Institute of Genetics and Molecular Medicine
Lab Applied Bioinformatics of Cancer
Street address Carrington Crescent
City Edinburgh
ZIP/Postal code EH4 2XR
Country United Kingdom
Platforms (1)
GPL14550 Agilent-028004 SurePrint G3 Human GE 8x60K Microarray (Probe Name Version)
Samples (40)
GSM4467269 820-TE: Tumour epithelium_sample_820
GSM4467270 820-TS: Tumour stroma_sample_820
GSM4467271 222-TE: Tumour epithelium_sample_222
BioProject PRJNA624137

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE148398_Processed_data.txt.gz 4.8 Mb (ftp)(http) TXT
GSE148398_Raw_data.txt.gz 18.1 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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