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| Status |
Public on Jul 27, 2020 |
| Title |
Genome-wide DNA methylation analysis of lung carcinoma II |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by genome tiling array
|
| Summary |
Complements GSE56044 with 36 additional samples belonging to the large-cell carcinoma (LCC) and large-cell neuroendocrine (LCNEC) histologies. LCC classification is according to WHO 2004 guidelines.
Genomic DNA from 36 lung cancer samples was treated with bisulfite and hybridized to Illumina methylation 450K arrays using standard protocols. Signal intensities were obtained from GenomeStudio (Illumina), converted to beta-values, filtered, and normalized to remove biases between Infinium I and II probes. Both raw intensity values, signal detection p-values and the final normalized data are included for each sample.
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| |
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| Overall design |
Genome-wide DNA methylation analysis of 36 lung carcinomas using Illumina Human Methylation 450K v1.0 Beadchips.
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| |
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| Contributor(s) |
Staaf J, Aine M |
| Citation(s) |
32707835 |
| |
| Submission date |
Apr 28, 2020 |
| Last update date |
Jul 29, 2020 |
| Contact name |
Johan Staaf |
| Organization name |
SCIBLU - Swegene Centre for Integrative Biology at Lund University
|
| Street address |
Medicon Village
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| City |
Lund |
| ZIP/Postal code |
SE-223 81 |
| Country |
Sweden |
| |
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| Platforms (1) |
| GPL13534 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) |
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| Samples (36)
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| Relations |
| BioProject |
PRJNA628977 |
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