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Series GSE149766 Query DataSets for GSE149766
Status Public on Apr 12, 2021
Title Negative Elongation Factor (NELF) regulation of muscle progenitor expansion assessed via Precision Run-On Sequencing (PRO-seq)
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Other
Summary Assessment of promoter-proximal RNA polymerase II pausing in wild type and NELF-B KO (muscle stem cell-specific deletion) myoblasts
 
Overall design PRO-seq: 2 biological replicates each for WT and NELF-B KO; RNA-seq: 2 biological replicates each for WT and NELF-B KO
 
Contributor(s) Robinson DC, Goldman SR, Nelson GM, Adelman K, Dilworth FJ
Citation(s) 33735618
Submission date May 03, 2020
Last update date Apr 14, 2021
Contact name Karen Adelman
E-mail(s) karen_adelman@hms.harvard.edu
Organization name Harvard Medical School
Department Biological Chemistry and Molecular Pharmacology
Street address 45 Shattuck St. LHRRB-201a
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (2)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (8)
GSM4512063 PRO_WT_1
GSM4512064 PRO_WT_2
GSM4512065 PRO_NELFBKO_1
Relations
BioProject PRJNA630071
SRA SRP259970

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE149766_RAW.tar 377.4 Mb (http)(custom) TAR (of BW)
GSE149766_deseq2results_nelfbko_vs_wt.tsv.gz 1.3 Mb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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