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Series GSE151376 Query DataSets for GSE151376
Status Public on Nov 01, 2020
Title Coordination between the microbiota and the root diffusion barriers is required for plant mineral nutrient homeostasis
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary RNASeq of roots from two genotypes of Arabidopsis thaliana plants, Col-0 and myb36-2 grown axenically or with a 41 member bacterial Synthetic Community (SynCom) to explore the interaction between the root diffusion barriers and the root microbiome.
 
Overall design Explore the interaction of the root diffusion barriers and the microbiome
 
Contributor(s) Castrillo G, Salas-Gonzalez I
Citation(s) 33214288
Submission date May 28, 2020
Last update date Jan 31, 2021
Contact name Gabriel Castrillo
E-mail(s) Gabriel.Castrillo@nottingham.ac.uk
Organization name University of Nottingham
Department School of Biosciences
Street address Nr Loughborough
City Loughborough
ZIP/Postal code LE12 5RD
Country United Kingdom
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (80)
GSM4576934 S_118: myb36-2_SynCom_BioRep2_S118TechRep1
GSM4576935 S_118.1: myb36-2_SynCom_BioRep2_S118TechRep2
GSM4576936 S_118.2: myb36-2_SynCom_BioRep2_S118TechRep3
Relations
BioProject PRJNA635635
SRA SRP265112

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE151376_mRNA_counts_Col-0_myb36-2_SynCom.txt.gz 1.5 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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