|
| Status |
Public on Jun 14, 2020 |
| Title |
The Lon protease links nucleotide metabolism with proteotoxic stress |
| Organism |
Caulobacter vibrioides NA1000 |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
Purpose: Next-generation sequencing (NGS) has revolutionized systems-based analysis of cellular pathways. The goals of this study are to compare NGS-derived transcriptome profiling (RNA-seq) and transposon insertion mutagenesis (Tnseq) libraries of Lon deletions compared to wt Caulobacter crescentus.
Methods: See Methods section of The Lon protease links nucleotide metabolism with proteotoxic stress for information regarding methods or contact lead correspondence. Briefly, Samples for RNAseq were extracted from wt and lon deletion strains grown to mid exponential phase.
Methods: See Methods section of The Lon protease links nucleotide metabolism with proteotoxic stress for information regarding methods or contact lead correspondence. Briefly, Samples for Tnseq were generated by Eztn5 transposon mutagenesis.
Conclusions: Our study represents the first detailed analysis of lon deletion comparison to wt caulobacter transcriptomes, with biologic replicates, generated by RNA-seq technology.
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| Overall design |
wt and lon deletion strains for both RNAseq and Tnseq
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| |
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| Contributor(s) |
Peter C, Rilee Z |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Jun 13, 2020 |
| Last update date |
Jun 16, 2020 |
| Contact name |
Rilee D Zeinert |
| E-mail(s) |
rzeinert@umass.edu
|
| Phone |
9206366963
|
| Organization name |
UMass Amherst
|
| Lab |
Chien Lab
|
| Street address |
240 Thatcher Way
|
| City |
Amherst |
| State/province |
MA |
| ZIP/Postal code |
01003 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL26188 |
Illumina NextSeq 500 (Caulobacter vibrioides NA1000) |
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| Samples (8)
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| Relations |
| BioProject |
PRJNA639285 |
| SRA |
SRP267187 |
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