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Series GSE15410 Query DataSets for GSE15410
Status Public on Mar 01, 2010
Title AB* zebrafish embryos exposed to 1 ng/mL TCDD from 1d to 5d post-fertilization.
Organism Danio rerio
Experiment type Expression profiling by array
Summary Transcriptomic profiling of the response to dioxin in developing zebrafish embryos, at 24, 48, 72, 96, and 120 h post-fertilization. The goal was to elucidate mechanisms by which dioxin causes toxicity in zebrafish; this dose was previously shown to induce teratogenesis.
 
Overall design Two conditions (dioxin or DMSO exposure), 5 timepoints, 4 replicates per timepoint derived from 4 entirely separate experiments; multiple pooled embryos per replicate. Embryo RNA was compared on each chip to a universal reference RNA obtained from zebrafish Zf4 cells (embryonic fibroblast cells).
 
Contributor(s) Alexeyenko A, Wassenberg DM, Lobenhofer EK, Yen J, Sonnhammer EL, Linney E, Meyer JN
Citation(s) 20463971
Submission date Mar 26, 2009
Last update date Dec 06, 2012
Contact name Patrick Hurban
E-mail(s) phurban@cogenics.com
Phone 919-379-5480
Fax 919-468-8766
URL http://www.cogenics.com
Organization name Cogenics, Inc.
Department Scientific Affairs
Street address 100 Perimeter Park Dr Ste C
City Morrisville
State/province NC
ZIP/Postal code 27560
Country USA
 
Platforms (1)
GPL2878 Agilent-013223 D. rerio (Zebrafish) Oligo Microarray G2518A Option 001 (Feature Number version)
Samples (39)
GSM386787 1ng/mL R1 DMSO day 1 Danio rerio 1 embryo
GSM386788 1ng/mL R1 DMSO day 2 Danio rerio 3 embryo
GSM386789 1ng/mL R1 DMSO day 3 Danio rerio 5 embryo
Relations
BioProject PRJNA117085

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE15410_RAW.tar 226.0 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
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