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Series GSE15430 Query DataSets for GSE15430
Status Public on Mar 28, 2009
Title ChIP-chip of H3K27Ac in Drosophila at different time points of development
Project modENCODE
Organism Drosophila melanogaster
Experiment type Genome binding/occupancy profiling by genome tiling array
Summary This is a dataset generated by the Drosophila Regulatory Elements modENCODE Project led by Kevin P. White at the University of Chicago. It contains ChIP-chip data on Agilent 244K dual-color arrays for antibody: H3K27Ac at 12 different time-points of Drosophila development.

Current Dataset:

[GSM386179..GSM386187]: ChIP-chip of H3K27AC in Drosophila embryos at 0-4 hours of development
[GSM386216..GSM386224]: ChIP-chip of H3K27AC in Drosophila embryos at 4-8 hours of development
[GSM386334..GSM386342]: ChIP-chip of H3K27AC in Drosophila embryos at 0-4 hours of development (second dataset)
[GSM418501..GSM418509]: ChIP-chip of H3K27AC in Adult male
[GSM441405..GSM441410]: ChIP-chip of H3K27AC in Drosophila embryos at 8-12 hours of development
[GSM441411..GSM441419]: ChIP-chip of H3K27AC in Drosophila embryos at 12-16 hours of development
[GSM441420..GSM441436]: ChIP-chip of H3K27AC in Drosophila embryos at 16-20 hours of development
[GSM441437..GSM441445]: ChIP-chip of H3K27AC in Drosophila embryos at 20-24 hours of development
[GSM441446..GSM441931]: ChIP-chip of H3K27AC in L1
[GSM441933..GSM441941]: ChIP-chip of H3K27AC in L2
[GSM441943..GSM441951]: ChIP-chip of H3K27AC in L3
[GSM441984..GSM441992]: ChIP-chip of H3K27AC in Adult male
[GSM441995..GSM442003]: ChIP-chip of H3K27AC in Pupae

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf
 
Overall design For each combination of time-point and antibody, triplicate ChIP experiments have been performed and hybridized on Agilent 244K arrays. 3 arrays per genome have been used so that each time-point is a set of 9 tiling arrays.
Web link http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
 
Citation missing Has this study been published? Please login to update or notify GEO.
BioProject PRJNA63467
Submission date Mar 27, 2009
Last update date Aug 19, 2013
Contact name Kevin P. White
E-mail(s) kpwhite@uchicago.edu
Organization name University of Chicago
Department Institute for Genomics and Systems Biology
Street address 900 E. 57th STR. 10th FL.
City Chicago
State/province IL
ZIP/Postal code 60615
Country USA
 
Platforms (3)
GPL6949 Agilent-019182 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 1 of 3
GPL6950 Agilent-019183 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 2 of 3
GPL6951 Agilent-019184 Drosophila melanogaster Whole Genome ChIP-on-Chip Set 244K, Microarray 3 of 3
Samples (114)
GSM386179 E-0-4h_H3K27AC_1_of_3_rep_1
GSM386180 E-0-4h_H3K27AC_1_of_3_rep_2
GSM386181 E-0-4h_H3K27AC_1_of_3_rep_3
This SubSeries is part of SuperSeries:
GSE15292 Drosophila at different time points of development: ChIP-chip, ChIP-seq, RNA-seq

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE15430_RAW.tar 6.7 Gb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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