NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE154445 Query DataSets for GSE154445
Status Public on Apr 14, 2021
Title DNAJC9 Integrates Heat Shock Molecular Chaperones into the Histone Chaperone Network
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary From biosynthesis to assembly into nucleosomes, histones are handed through a cascade of histone chaperones, which shield histones from non-specific interactions. Whether mechanisms exist to safeguard the histone fold during histone chaperone handover events or to release trapped intermediates is unclear. Using structure-guided and functional proteomics, we identify and characterize a histone chaperone function of DNAJC9, a heat shock co-chaperone that promotes HSP70-mediated catalysis. We elucidate the structure of DNAJC9, in a histone H3-H4 co-chaperone complex with MCM2, revealing how this dual histone and heat shock co-chaperone binds histone substrates. We show that DNAJC9 recruits HSP70-type enzymes via its J domain to fold histone H3-H4 substrates: upstream in the histone supply chain, during replication- and transcription-coupled nucleosome assembly, and to clean up spurious interactions. With its dual functionality, DNAJC9 integrates ATP-resourced protein folding into the histone supply pathway to resolve aberrant intermediates throughout the dynamic lives of histones.
 
Overall design Quantitative ChIP-seq analysis of DNAJC9 distribution and abundance from cells expressing DNAJC9-MYC-Flag WT, J or 4A mutants, and control cells . All experiments were done in duplicates. Chromatin of Drosophila melanogater S2 cells were used as spike-in for normalization purpose.
Please note that each processed data was generated from both replicates (R1 and R2) and is linked to the corresponding R1 sample records.
 
Contributor(s) Hammond C, Reverón-Gómez N, Groth A
Citation(s) 33857403
Submission date Jul 14, 2020
Last update date Apr 17, 2021
Contact name Anja Groth
E-mail(s) anja.groth@cpr.ku.dk
Organization name Novo Nordisk Foundation Center for Protein Research
Street address Blegdamsvej 3B
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (9)
GSM4671244 WT_R1
GSM4671245 J_R1
GSM4671246 4AJ_R1
Relations
BioProject PRJNA646272
SRA SRP271863

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE154445_RAW.tar 51.8 Mb (http)(custom) TAR (of BEDGRAPH)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap