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Series GSE156268 Query DataSets for GSE156268
Status Public on Feb 05, 2022
Title A glycolytic enzyme enoalse negatively regulates plant immunity by repressing intracellular immune receptor NLR genes
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary AtLOS2 gene was isolated from a sensitized genetic screen aiming at the identification of negative regulators of SNC1 gene, a TIR-NLR gene. The whole genome transcriptome (RNA-seq) analysis of the los2-5 mutant revealed 1192 upregulated genes and 1140 downregulated genes in the mutant.
 
Overall design Two-week-old plants growing under constant light at 22C were sampled. Three biological replicates were performed for wild type control Col-0 and los2-5 mutant.
 
Contributor(s) Hua J, Yang L
Citation(s) 34791448
Submission date Aug 14, 2020
Last update date Feb 05, 2022
Contact name Leiyun Yang
E-mail(s) ly293@cornell.edu
Organization name Cornell University
Department Plant Biology
Lab Jian Hua lab
Street address 360 Tower road
City Ithaca
State/province NY
ZIP/Postal code 14850
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (6)
GSM4728028 WT Col-0 Rep1
GSM4728029 WT Col-0 Rep2
GSM4728030 WT Col-0 Rep3
Relations
BioProject PRJNA657243
SRA SRP277531

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE156268_los2RNAseq_raw_reads_all.txt.gz 262.3 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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