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Series GSE157308 Query DataSets for GSE157308
Status Public on Feb 04, 2021
Title Single-nucleotide–level mapping of DNA regulatory elements that control fetal hemoglobin expression (histone ChIP-Seq)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary gRNA screening for HbF+ and HbF- samples were performed to identify candidate cis-regulatory elements.
 
Overall design CRISPR pooled gRNA screening, RNA-seq, ChIP-seq and ATAC-seq were performed
 
Contributor(s) Cheng L, Li Y, Cheng Y
Citation(s) 33958780
Submission date Sep 01, 2020
Last update date Jun 11, 2021
Contact name Yong Cheng
E-mail(s) Yong.Cheng@stjude.org
Organization name St. Jude Children’s Research Hospital
Department Department of Hematology
Lab Yong Cheng Lab
Street address 262 Danny Thomas Place
City Memphis
State/province Tennessee
ZIP/Postal code 38018
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (16)
GSM4761244 1440307_H3K4me1_H2-D3
GSM4761245 1440308_H3K4me1_H2-D3
GSM4761246 1440309_H3K4me3_H2-D3
This SubSeries is part of SuperSeries:
GSE157311 Single-nucleotide–level mapping of DNA regulatory elements that control fetal hemoglobin expression
Relations
BioProject PRJNA660804
SRA SRP279658

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE157308_RAW.tar 3.4 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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