|
Status |
Public on Feb 04, 2021 |
Title |
Single-nucleotide–level mapping of DNA regulatory elements that control fetal hemoglobin expression (histone ChIP-Seq) |
Organism |
Homo sapiens |
Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
|
Summary |
gRNA screening for HbF+ and HbF- samples were performed to identify candidate cis-regulatory elements.
|
|
|
Overall design |
CRISPR pooled gRNA screening, RNA-seq, ChIP-seq and ATAC-seq were performed
|
|
|
Contributor(s) |
Cheng L, Li Y, Cheng Y |
Citation(s) |
33958780 |
|
Submission date |
Sep 01, 2020 |
Last update date |
Jun 11, 2021 |
Contact name |
Yong Cheng |
E-mail(s) |
Yong.Cheng@stjude.org
|
Organization name |
St. Jude Children’s Research Hospital
|
Department |
Department of Hematology
|
Lab |
Yong Cheng Lab
|
Street address |
262 Danny Thomas Place
|
City |
Memphis |
State/province |
Tennessee |
ZIP/Postal code |
38018 |
Country |
USA |
|
|
Platforms (1) |
GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
|
Samples (16)
|
|
This SubSeries is part of SuperSeries: |
GSE157311 |
Single-nucleotide–level mapping of DNA regulatory elements that control fetal hemoglobin expression |
|
Relations |
BioProject |
PRJNA660804 |
SRA |
SRP279658 |