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Series GSE157310 Query DataSets for GSE157310
Status Public on Feb 04, 2021
Title Single-nucleotide–level mapping of DNA regulatory elements that control fetal hemoglobin expression (ATAC-Seq)
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary gRNA screening for HbF+ and HbF- samples were performed to identify candidate cis-regulatory elements.
 
Overall design CRISPR pooled gRNA screening, RNA-seq, ChIP-seq and ATAC-seq were performed
 
Contributor(s) Cheng L, Li Y, Cheng Y
Citation(s) 33958780
Submission date Sep 01, 2020
Last update date Feb 14, 2022
Contact name Yong Cheng
E-mail(s) Yong.Cheng@stjude.org
Organization name St. Jude Children’s Research Hospital
Department Department of Hematology
Lab Yong Cheng Lab
Street address 262 Danny Thomas Place
City Memphis
State/province Tennessee
ZIP/Postal code 38018
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (8)
GSM4761264 HUDEP1_ATACseq_rep1
GSM4761265 HUDEP1_ATACseq_rep2
GSM4761266 HUDEP1_ATACseq_rep3
This SubSeries is part of SuperSeries:
GSE157311 Single-nucleotide–level mapping of DNA regulatory elements that control fetal hemoglobin expression
Relations
BioProject PRJNA660806
SRA SRP279660

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE157310_RAW.tar 1.3 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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