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Series GSE157934 Query DataSets for GSE157934
Status Public on Dec 31, 2020
Title Analysis of Whole Genome Sequence and Genome-wide SNPs in Highly Inbred Pigs [Array]
Organism Sus scrofa
Experiment type Genome variation profiling by SNP array
SNP genotyping by SNP array
Summary We conducted a genome wide survey of single nucleotide polymorphisms (SNPs) using the porcine 60 K SNP chips on inbred pigs
Overall design The Illumina PorcineSNP60 BeadChip (Illumina, San Diego, CA) was used to genotype the Banna Mini-pig Inbred Line (BMI)
Contributor(s) Huo J, Zhang L
Citation(s) 34658041
Submission date Sep 14, 2020
Last update date Oct 22, 2021
Contact name Jinlong Huo
Phone 086 13708761403
Organization name Yunnan Agricultural University
Department Faculty of Animal Science and Technology
Lab Huo
Street address Jin-hei
City Kunming
State/province Yunnan
ZIP/Postal code 650201
Country China
Platforms (1)
GPL11379 Illumina Porcine SNP60 BeadChip (WG-410)
Samples (48)
GSM4781272 Blood, BMI-Y341
GSM4781273 Blood, BMI-0308
GSM4781274 Blood, BMI-Y229
This SubSeries is part of SuperSeries:
GSE157935 Genome-wide single nucleotide polymorphism array and whole-genome sequencing reveal the inbreeding progression of Banna minipig inbred line
BioProject PRJNA663378

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE157934_RAW.tar 42.9 Mb (http)(custom) TAR (of IDAT)
Processed data included within Sample table

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