NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE157941 Query DataSets for GSE157941
Status Public on Apr 14, 2021
Title RIP-seq analysis of PTBP1-bound RNAs
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary To reveal PTBP1-bound RNAs, we conducted RNA immunoprecipitation sequencing (RIP-seq) with total RNA samples from MKN-28 cells.
 
Overall design MKN-28 cells were used for RIP-seq. Fold enrichment of RNAs pulled down by PTBP1 antibody was detected by High-throughput Sequencing, and IgG served as a negative control.
 
Contributor(s) Deng M
Citation(s) 34706749
Submission date Sep 15, 2020
Last update date Nov 04, 2021
Contact name Min Deng
E-mail(s) mindeng@gzhmu.edu.cn
Phone 86-20-66673666
Organization name Affiliated Cancer Hospital & Institute of Guangzhou Medical University
Street address 78 Hengzhigang Road
City Guangzhou
ZIP/Postal code 510095
Country China
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (2)
GSM4781510 MKN-28 cells, IgG RIP-seq
GSM4781511 MKN-28 cells, PTBP1 RIP-seq
Relations
BioProject PRJNA663450
SRA SRP282417

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE157941_Peak_Annotations.xlsx 2.2 Mb (ftp)(http) XLSX
GSE157941_Promoter_Peak_Annotation.xlsx 562.5 Kb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap