GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE160129 Query DataSets for GSE160129
Status Public on Oct 31, 2021
Title H3K36me3 Reader NPAC/GLYR1 Recruits H3K4 Demethylase LSD2/KDM1B to Modulate Active Gene Transcription
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by array
Summary NPAC ChIP were performed by anti-Flag and anti-HA tandem affinity purification from HeLa stably expressing Flag-HA tagged NPAC from pOZ-N vector, and enrichement on chromosome 3, 21, and 22 were determined by chip microarray analysis using Affymatrix HumanTiling 2.0 arrays
Overall design NPAC ChIP-on-chip were performed in parallel with LSD2 (GSM565104) and enrichment were determined by comparing to input hybridization. The Input and LDS2 ChIP samples from GSM565104 were included here since all were used in the analysis.
Contributor(s) Shi Y, Fang R
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Oct 26, 2020
Last update date Nov 01, 2021
Contact name Rui Fang
Phone 3392240413
Organization name Brigham and Women's Hospital
Street address 221 Longwood Ave. EBRC 222
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL4912 [Hs35b_P03R] Affymetrix Human Tiling 2.0R Set, Array 3
Samples (3)
GSM4860415 3C_N-NP_Hs7C
GSM4860416 1C_N-input_Hs7C
GSM4860417 LSD2
BioProject PRJNA672037

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE160129_RAW.tar 210.9 Mb (http)(custom) TAR (of BAR, CEL, TXT)
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap