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GEO accession:
Series GSE160174
Query DataSets for GSE160174
Status
Public on Dec 06, 2021
Title
Induction of T cell dysfunction and NK-like T cell differentiation in vitro and in patients after CAR T cell treatment
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Other
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
34861191
Submission date
Oct 26, 2020
Last update date
Jan 10, 2025
Contact name
Gregory Donahue
Organization name
The University of Pennsylvania
Department
Cell & Developmental Biology
Lab
Zaret Lab
Street address
3400 Civic Center Blvd, Bldg 421
City
Philadelphia
State/province
PA
ZIP/Postal code
19104
Country
USA
Platforms (1)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
Samples (65)
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GSM4861210
R2 Control Day 0 CAR+ T1 [ATAC-seq]
GSM4861211
R2 Continuous CAR+ T1 [ATAC-seq]
GSM4861212
R3 Control Day 0 CAR+ T1 [ATAC-seq]
GSM4861213
R3 Continuous CAR+ T1 [ATAC-seq]
GSM4861214
R4 Control Day 0 CAR+ T1 [ATAC-seq]
GSM4861215
R4 Continuous CAR+ T1 [ATAC-seq]
GSM4861216
R5 Control Day 0 CAR+ T1 [ATAC-seq]
GSM4861217
R5 Continuous CAR+ T1 [ATAC-seq]
GSM4861471
R2 Control Day 0 CAR+ T1 [RNA-seq]
GSM4861472
R2 Control Day 0 CAR+ T2 [RNA-seq]
GSM4861473
R2 Control Day 0 CAR- T1 [RNA-seq]
GSM4861474
R2 Other CAR+ T1 [RNA-seq]
GSM4861475
R2 Other CAR+ T2 [RNA-seq]
GSM4861476
R2 Continuous CAR+ T1 [RNA-seq]
GSM4861477
R2 Continuous CAR+ T2 [RNA-seq]
GSM4861478
R2 Continuous CAR- T1 [RNA-seq]
GSM4861479
R3 Control Day 0 CAR+ T1 [RNA-seq]
GSM4861480
R3 Control Day 0 CAR+ T2 [RNA-seq]
GSM4861481
R3 Control Day 0 CAR- T1 [RNA-seq]
GSM4861482
R3 Control Day 0 CAR- T2 [RNA-seq]
GSM4861483
R3 Other CAR+ T1 [RNA-seq]
GSM4861484
R3 Other CAR+ T2 [RNA-seq]
GSM4861485
R3 Continuous CAR+ T1 [RNA-seq]
GSM4861486
R3 Continuous CAR+ T2 [RNA-seq]
GSM4861487
R3 Continuous CAR- T1 [RNA-seq]
GSM4861488
R3 Continuous CAR- T2 [RNA-seq]
GSM4861489
R4 Control Day 0 CAR+ T1 [RNA-seq]
GSM4861490
R4 Control Day 0 CAR+ T2 [RNA-seq]
GSM4861491
R4 Control Day 0 CAR- T1 [RNA-seq]
GSM4861492
R4 Control Day 0 CAR- T2 [RNA-seq]
GSM4861493
R4 Other CAR+ T1 [RNA-seq]
GSM4861494
R4 Other CAR+ T2 [RNA-seq]
GSM4861495
R4 Continuous CAR+ T1 [RNA-seq]
GSM4861496
R4 Continuous CAR+ T2 [RNA-seq]
GSM4861497
R4 Continuous CAR- T1 [RNA-seq]
GSM4861498
R4 Continuous CAR- T2 [RNA-seq]
GSM4861499
R4 Day 16 CAR+ T1 [RNA-seq]
GSM4861500
R4 Day 16 CAR+ T2 [RNA-seq]
GSM4861501
R5 Control Day 0 CAR+ T1 [RNA-seq]
GSM4861502
R5 Control Day 0 CAR+ T2 [RNA-seq]
GSM4861503
R5 Control Day 0 CAR- T1 [RNA-seq]
GSM4861504
R5 Control Day 0 CAR- T2 [RNA-seq]
GSM4861505
R5 Other CAR+ T1 [RNA-seq]
GSM4861506
R5 Other CAR+ T2 [RNA-seq]
GSM4861507
R5 Continuous CAR+ T1 [RNA-seq]
GSM4861508
R5 Continuous CAR+ T2 [RNA-seq]
GSM4861509
R5 Continuous CAR- T1 [RNA-seq]
GSM4861510
R5 Continuous CAR- T2 [RNA-seq]
GSM4861511
R5 Day 16 CAR+ T1 [RNA-seq]
GSM4861512
R5 Day 16 CAR+ T2 [RNA-seq]
GSM4861647
ND150.Day0_Control [scRNA-seq]
GSM4861648
ND150.Day28_Continuous [scRNA-seq]
GSM4861649
ND388.Day0_Control [scRNA-seq]
GSM4861650
ND388.Day20_Continuous [scRNA-seq]
GSM4861651
ND538.Day0_Control [scRNA-seq]
GSM4861652
ND538.Day28_Continuous [scRNA-seq]
GSM4861851
ND150.Day0_Control [scTCR-seq]
GSM4861852
ND150.Day28_Continuous [scTCR-seq]
GSM4861853
ND538.Day0_Control [scTCR-seq]
GSM4861854
ND538.Day28_Continuous [scTCR-seq]
GSM5709962
ND539.Day20_Continuous
GSM5709963
ND539.Day20_Continuous.ID3_KO
GSM5709964
ND566.Day24_Continuous
GSM5709965
ND566.Day24_Continuous.ID3_KO
GSM5709966
ND566.Day24_Continuous.Sox4_KO
This SuperSeries is composed of the following SubSeries:
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GSE160139
Induction of T cell dysfunction and NK-like T cell differentiation in vitro and in patients after CAR T cell treatment [ATAC-seq]
GSE160154
Induction of T cell dysfunction and NK-like T cell differentiation in vitro and in patients after CAR T cell treatment [RNA-seq]
GSE160160
Induction of T cell dysfunction and NK-like T cell differentiation in vitro and in patients after CAR T cell treatment [scRNA-seq]
GSE160173
Induction of T cell dysfunction and NK-like T cell differentiation in vitro and in patients after CAR T cell treatment [scTCR-seq]
GSE189924
Induction of T cell dysfunction and NK-like T cell differentiation in vitro and in patients after CAR T cell treatment [scRNA-seq KO]
Relations
BioProject
PRJNA672162
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE160174_RAW.tar
2.3 Gb
(http)
(custom)
TAR (of BW, CLOUPE, CSV, TAR)
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