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GEO accession:
Series GSE162494
Query DataSets for GSE162494
Status
Public on Dec 02, 2023
Title
Total RNA-seq in Calu3 cells upon SARS-CoV2 infection
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Summary
This study addresses the question how host cells transcriptionally respond to SARS-CoV2 infection.
Overall design
Calu3 cells were infected with Influenza or SARS CoV-2 virus for various time points before harvesting them for RNA and chromatin profiling.
Contributor(s)
Weigang S
,
Kochs G
,
Schwemmle M
,
Rawat P
,
Hummel B
,
Sawarkar R
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Submission date
Dec 02, 2020
Last update date
Dec 02, 2023
Contact name
Barbara Hummel
Organization name
Max Planck Institute of Immunobiology and Epigenetics
Street address
Stübeweg 51
City
Freiburg
ZIP/Postal code
79108
Country
Germany
Platforms (1)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (24)
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GSM4952896
TotalRNAseq_Calu3_Covid_24h_Rep1
GSM4952897
TotalRNAseq_Calu3_Covid_24h_Rep2
GSM4952898
TotalRNAseq_Calu3_Covid_24h_Rep3
GSM4952899
TotalRNAseq_Calu3_Covid_6h_Rep1
GSM4952900
TotalRNAseq_Calu3_Covid_6h_Rep2
GSM4952901
TotalRNAseq_Calu3_Covid_6h_Rep3
GSM4952902
TotalRNAseq_Calu3_Inactive_Covid_24h_Rep1
GSM4952903
TotalRNAseq_Calu3_Inactive_Covid_24h_Rep2
GSM4952904
TotalRNAseq_Calu3_Inactive_Covid_24h_Rep3
GSM4952905
TotalRNAseq_Calu3_Inactive_Covid_6h_Rep1
GSM4952906
TotalRNAseq_Calu3_Inactive_Covid_6h_Rep2
GSM4952907
TotalRNAseq_Calu3_Inactive_Covid_6h_Rep3
GSM4952908
TotalRNAseq_Calu3_Influenza_24h_Rep1
GSM4952909
TotalRNAseq_Calu3_Influenza_24h_Rep2
GSM4952910
TotalRNAseq_Calu3_Influenza_24h_Rep3
GSM4952911
TotalRNAseq_Calu3_Influenza_6h_Rep1
GSM4952912
TotalRNAseq_Calu3_Influenza_6h_Rep2
GSM4952913
TotalRNAseq_Calu3_Influenza_6h_Rep3
GSM4952914
TotalRNAseq_Calu3_Mock_24h_Rep1
GSM4952915
TotalRNAseq_Calu3_Mock_24h_Rep2
GSM4952916
TotalRNAseq_Calu3_Mock_24h_Rep3
GSM4952917
TotalRNAseq_Calu3_Mock_6h_Rep1
GSM4952918
TotalRNAseq_Calu3_Mock_6h_Rep2
GSM4952919
TotalRNAseq_Calu3_Mock_6h_Rep3
This SubSeries is part of SuperSeries:
GSE162495
SARS-CoV2 causes host transcriptional attenuation through an epigenetic pathway.
Relations
BioProject
PRJNA682048
SRA
SRP295490
Download family
Format
SOFT formatted family file(s)
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MINiML formatted family file(s)
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TXT
Supplementary file
Size
Download
File type/resource
GSE162494_totalRNAseq_raw_counts.tsv.gz
1002.5 Kb
(ftp)
(http)
TSV
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record
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