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Series GSE16269 Query DataSets for GSE16269
Status Public on Jun 02, 2009
Title Dm_1182-4H_TotalRNA_p200_038-040-042_38bp
Project modENCODE
Organism Drosophila melanogaster
Experiment type Expression profiling by genome tiling array
Non-coding RNA profiling by genome tiling array
Summary modENCODE_submission_40

This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648

Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

Keywords: tiling array analysis
 
Overall design EXPERIMENT TYPE: Transcript tiling array analysis

BIOLOGICAL SOURCE: Cell Line: 1182-4H

TISSUE: embryo-derived cell-line

GENOTYPE: mh

SEX: Unknown

NUMBER OF REPLICATES: 3; Replicate 1 applied to 1 array(s), Replicate 2 applied to 1 array(s), Replicate 3 applied to 1 array(s), No dye swap.

EXPERIMENTAL FACTORS: Cell Line 1182-4H
Web link http://www.modencode.org
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
 
Contributor(s) Gingeras T, Willingham A, Celniker S
Citation(s) 21179090, 21177962
BioProject PRJNA168994
Submission date May 28, 2009
Last update date Jul 08, 2015
Contact name DCC modENCODE
E-mail(s) help@modencode.org
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Lab modENCODE DCC
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
 
Platforms (1)
GPL6629 [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array
Samples (3)
GSM409470 1182-4H (Celniker/RNA:38) extraction1_array1
GSM409471 1182-4H (Celniker/RNA:40) extraction2_array1
GSM409472 1182-4H (Celniker/RNA:42) extraction3_array1

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16269_Dro2_AS_1182-4H_568.wig.gz 13.9 Mb (ftp)(http) WIG
GSE16269_RAW.tar 129.2 Mb (http)(custom) TAR (of CEL)
Processed data are available on Series record

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