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Series GSE162737 Query DataSets for GSE162737
Status Public on Dec 07, 2020
Title TUT4 affected genes and lncRNA in human esophageal carcinoma cell and cervical cancer cell
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary This study aims to evaluate the effect of TUT4 knockdown on the function and global gene expression and know and novel lncRNAs respectively in human esophageal carcinoma cell (TE-1) and cervical cancer cell (Hela). Cells with TUT4 silencing were compared with control cells by LncRNA-Seq.
Overall design RNA-seq of shNC and shTUT4 TE-1 and HeLa cells.
Contributor(s) Luo JD
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Dec 06, 2020
Last update date Dec 07, 2020
Contact name Pengfei Liu
Organization name Jiangsu Jiangyin People's Hospital
Street address NO. 163 Shoushan Road
City Jiangyin
State/province Jiangsu province
ZIP/Postal code 214400
Country China
Platforms (1)
GPL24676 Illumina NovaSeq 6000 (Homo sapiens)
Samples (12)
GSM4958735 T_shNC1
GSM4958736 T_shNC2
GSM4958737 T_shNC3
BioProject PRJNA682814
SRA SRP296567

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE162737_Hela_Novel_lncRNA_information.txt.gz 86.0 Kb (ftp)(http) TXT
GSE162737_Hela_Novel_mRNA_information.txt.gz 1.8 Kb (ftp)(http) TXT
GSE162737_Hela_anno_genes.FPKM.txt.gz 1.9 Mb (ftp)(http) TXT
GSE162737_Hela_anno_transcripts.FPKM.txt.gz 7.4 Mb (ftp)(http) TXT
GSE162737_Hela_lnc_transcripts.FPKM.txt.gz 3.1 Mb (ftp)(http) TXT
GSE162737_Hela_mRNA_gene.FPKM.txt.gz 762.3 Kb (ftp)(http) TXT
GSE162737_Hela_mRNA_transcripts.FPKM.txt.gz 2.5 Mb (ftp)(http) TXT
GSE162737_TE-1_Novel_lncRNA_information.txt.gz 99.9 Kb (ftp)(http) TXT
GSE162737_TE-1_Novel_mRNA_information.txt.gz 1.5 Kb (ftp)(http) TXT
GSE162737_TE-1_anno_genes.FPKM.txt.gz 1.9 Mb (ftp)(http) TXT
GSE162737_TE-1_anno_transcripts.FPKM.txt.gz 7.5 Mb (ftp)(http) TXT
GSE162737_TE-1_lnc_transcripts.FPKM.txt.gz 3.1 Mb (ftp)(http) TXT
GSE162737_TE-1_mRNA_gene.FPKM.txt.gz 790.5 Kb (ftp)(http) TXT
GSE162737_TE-1_mRNA_transcripts.FPKM.txt.gz 2.6 Mb (ftp)(http) TXT
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