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Series GSE16315 Query DataSets for GSE16315
Status Public on Jun 02, 2009
Title Dm_y[1]cn[1] bw[1] sp[1]_embryo_20-22h_TotalRNA_p200_272-274-276_38bp
Project modENCODE
Organism Drosophila melanogaster
Experiment type Expression profiling by genome tiling array
Non-coding RNA profiling by genome tiling array
Summary modENCODE_submission_116

This submission comes from a modENCODE project of Susan Celniker. For full list of modENCODE projects, see http://www.genome.gov/26524648

Project Goal: We will generate over 600 RNA samples in biological triplicate and use them to generate expression profile maps detailing the sites of transcription across the fly genome using whole genome tiling arrays at 38 bp resolution as a broad survey of the transcriptome and 7 bp arrays resolution to identify at high resolution transcripts ends, splice sites, and small RNAs.

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf

Keywords: Transcript tiling array analysis
 
Overall design EXPERIMENT TYPE: Transcript tiling array analysis

BIOLOGICAL SOURCE: Strain: Y cn bw sp; Developmental Stage: Embryo 20-22h

GENOTYPE: y[1] oc[R3.2]; Gr22b[1] Gr22d[1] cn[1] CG33964[R4.2] bw[1] sp[1]; LysC[1] lab[R4.2] MstProx[1] GstD5[1] Rh6[1]

SEX: Unknown

NUMBER OF REPLICATES: 2; Replicate 1 applied to 1 array(s), Replicate 2 applied to 1 array(s), No dye swap.

EXPERIMENTAL FACTORS: Developmental Stage Embryo 20-22h
Web link http://www.modencode.org
http://www.ncbi.nlm.nih.gov/projects/geo/info/ENCODE.html
 
Contributor(s) Gingeras T, Willingham A, Celniker S
Citation(s) 21179090
BioProject PRJNA168994
Submission date May 28, 2009
Last update date Jul 08, 2015
Contact name DCC modENCODE
E-mail(s) help@modencode.org
Phone 416-673-8579
Organization name Ontario Institute for Cancer Research
Lab modENCODE DCC
Street address MaRS Centre, South Tower, 101 College Street, Suite 800
City Toronto
State/province Ontario
ZIP/Postal code M5G 0A3
Country Canada
 
Platforms (1)
GPL6629 [DM_tiling2_MR] Affymetrix Drosophila Tiling 2.0R Array
Samples (2)
GSM409605 embryos,20-22 hr after egg laying (Celniker/RNA:276) extraction1_array1
GSM409606 embryos,20-22 hr after egg laying (Celniker/RNA:274) extraction2_array1

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16315_Dro2_AS_Dm_emb_22h_RW_728.wig.gz 13.8 Mb (ftp)(http) WIG
GSE16315_RAW.tar 87.2 Mb (http)(custom) TAR (of CEL)
Processed data are available on Series record

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