GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE163190 Query DataSets for GSE163190
Status Public on Oct 28, 2021
Title Transcript analysis under phosphate and iron deprivation in 7 day old Arabidopsis thaliana seedlings
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Arabidopsis wild-type plants (Col-0 accession) were grown on control (+Fe+P) for 7 days on 0.1X MS then transferred to three different medium: control (+Fe+P), iron deficiency (-Fe+P), and iron and phosphate deficiency conditions (-Fe-P). Shoots were collected 39 h, 52 h and 76 h after the transfer. For RNA-seq experiments, three biological replicates were used for each time point (39h, 52h and 76h) and each condition (+Fe+P, -Fe+P and -Fe-P) for a total of 27 samples.
Overall design Transcrip analysis of 7do Arabidospsis thaliana seedlings under three conditions (+P+Fe, +P-Fe, -P-Fe) at three time points: 39h, 52h and 76h
Contributor(s) Dorone Y
Citation(s) 34893639
Submission date Dec 14, 2020
Last update date Apr 20, 2022
Contact name Yanniv Dorone
Organization name Stanford University
Street address 371 Jane Stanford Way
City Stanford
ZIP/Postal code 94305
Country USA
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (27)
GSM4974259 PplusFeplus39hours1
GSM4974260 PplusFeplus39hours2
GSM4974261 PplusFeplus39hours3
BioProject PRJNA685167
SRA SRP297920

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163190_TPM_all.xlsx 8.7 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap