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Series GSE163850 Query DataSets for GSE163850
Status Public on Jun 16, 2021
Title Chromatin architectural proteins regulate flowering time by precluding gene looping
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary We identified genes that could be regulated by HON4 and HON5 by using RNA-seq and ChIP-seq.
 
Overall design Transcriptome analysis of genes regulated by HON4 and HON5. Genome-wide identification binding sites of HON5 by ChIP-seq.
 
Contributor(s) Zhao B, Sung S
Citation(s) 34117065
Submission date Dec 24, 2020
Last update date Jun 24, 2021
Contact name Bo Zhao
E-mail(s) bozhao@austin.utexas.edu
Organization name The University of Texas
Department Molecular Biosciences, Institute for Cellular and Molecular Biology
Lab Sung Lab
Street address 2506 Speedway, NMS 5.268
City Austin
State/province Texas
ZIP/Postal code 78712
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (7)
GSM4988511 Whole seedling, WT_rep1
GSM4988512 Whole seedling, WT_rep2
GSM4988513 Whole seedling, hon45_rep1
Relations
BioProject PRJNA687751
SRA SRP299535

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE163850_RAW.tar 88.9 Mb (http)(custom) TAR (of BW, TXT)
GSE163850_Raw_gene_count.txt.gz 306.4 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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