GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE16526 Query DataSets for GSE16526
Status Public on Feb 05, 2010
Title Genome-wide map of PCL2 (Polycomb-like 2) enrichment in undifferentiated mouse embryonic stem cells (ESCs)
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary In total 8,736,191 reads from IP fraction and 9,958,984 reads from Wash fraction uniquely mapped to the mouse genome (mm9). Settings for enrichment analysis: maxSpacing=500; minHits=20; minPeakHits=6; minRatio=3. 4,701 regions have been identified as enriched in the IP fraction. In order to get a rough idea of false discovery rate (FDR), enrichment analysis using Wash fraction as test and IP fraction as control was performed, 15 regions was found. This suggests that the FDR likely is around 0.3%.

Keywords: Epigenetics
Overall design Examination of PCL2 enrichment in mouse ESCs.
Contributor(s) Walker E, Chang WY, Stanford WL
Citation(s) 20144788
Submission date Jun 09, 2009
Last update date May 15, 2019
Contact name William L Stanford
Organization name University of Toronto
Department IBBME
Lab William L. Stanford
Street address 164 College St
City Toronto
State/province Ontario
ZIP/Postal code M5S 3G9
Country Canada
Platforms (1)
GPL9185 Illumina Genome Analyzer (Mus musculus)
Samples (1)
GSM415050 PCL2_ChIPSeq
SRA SRP001841
BioProject PRJNA116091

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16526_RAW.tar 231.9 Mb (http)(custom) TAR (of TXT, XLS)
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap