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Series GSE1654 Query DataSets for GSE1654
Status Public on Oct 08, 2004
Title Circadian Profiling of the Transcriptome in Immortalized Rat SCN Cells (3 biological replicates)
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary To determine whether immortalized cells derived from the rat SCN (SCN 2.2) retain intrinsic rhythm-generating properties characteristic of the SCN, oscillatory properties of the SCN2.2 transcriptome were analyzed and compared to those found in the rat SCN in vivo using rat U34A Affymetrix GeneChips. SCN2.2 cells were expanded in 6-well plates. At 6-hour interval across 2 circadian cycles, cells from single 6-well plates were harvested and pooled for total RNA extraction.
Keywords: other
Contributor(s) Menger GJ, Lu K, Thomas TL, Cassone VM, Earnest DJ
Citation(s) 15769907
Submission date Aug 09, 2004
Last update date Feb 21, 2017
Contact name Gus John Menger
Phone 979-260-7309
Organization name Texas A&M Health Science Center
Department Anatomy and Neurobiology
Lab Earnest
Street address
City College Station
State/province TX
ZIP/Postal code 77843-1114
Country USA
Platforms (1)
GPL85 [RG_U34A] Affymetrix Rat Genome U34 Array
Samples (27)
GSM28447 SCN2.2 Sample 1 (Exp#1-0 hr)
GSM28448 SCN2.2 Sample 1 (Exp#1-0 hr b)
GSM28449 SCN2.2 Sample 3 (Exp#1-6 hr)
This SubSeries is part of SuperSeries:
GSE4192 Circadian Profiling of the Transcriptome in Immortalized Rat SCN Cells
BioProject PRJNA104747

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE1654_RAW.tar 45.9 Mb (http)(custom) TAR (of CEL, EXP, RPT)

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