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Series GSE165727 Query DataSets for GSE165727
Status Public on Feb 24, 2021
Title Characterization of a KDM5 Small Molecule Inhibitor with Antiviral Activity against Hepatitis B Virus
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Chronic hepatitis B (CHB) is a global health care challenge and a major cause of liver disease. Existing therapies do not result in a functional cure in most individuals, necessitating new antiviral strategies against Hepatitis B virus (HBV). To identify additional therapeutic avenues, we performed a focused screen of epigenetic modifiers to identify inhibitors of HBV replication. From this work we identified small molecule inhibitors of the histone lysine demethylase 5 (KDM5) with antiviral activity against HBV. To enhance the cellular permeability and liver accumulation of the most potent KDM5 inhibitor identified (GS-080) a prodrug was developed (GS-5801) that resulted in improved bioavailability and liver exposure as well as increased accumulation of the H3K4me3:H3 ratio on chromatin. GS-5801 treatment of HBV-infected primary human hepatocytes inhibited HBV replication and antigen levels. Evaluation of GS 5801 antiviral activity in a humanized mouse model of HBV infection, however, did not result in antiviral efficacy, despite achieving pharmacodynamic levels of H3K4me3:H3 predicted to be efficacious. Together these data highlight discordance between the antiviral effects of GS 5801 observed in HBV-infected primary human hepatocytes.
 
Overall design HBV-infected primary human hepatocytes from three donors were treated with GS-5801 every three to four days for 13 days and total cellular mRNA was isolated and sequenced on days 1, 3, 10, and 13 after initiation of dosing
 
Contributor(s) Gilmore S, Ramirez R, Willkom M, Birkus G, Li L
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Submission date Jan 28, 2021
Last update date Feb 24, 2021
Contact name Ricardo Ramirez
Organization name Gilead Sciences, Inc.
Street address 333 Lakeside Drive
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (50)
GSM5048887 4: D0 HBV- 8181
GSM5048888 5: D0 HBV- 8130
GSM5048889 6: D0 HBV- 4239
Relations
BioProject PRJNA695546
SRA SRP303689

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Supplementary file Size Download File type/resource
GSE165727_phh.counts.txt.gz 1.7 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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