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Series GSE166447 Query DataSets for GSE166447
Status Public on Apr 27, 2021
Title RNaseI-RIPseq for rfl8-Functional characterization of the pentatricopeptide repeat protein PPR RFL8
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary blanc09_ripseq_rfl8-rnasei-ripseq for rfl8-Which mitochondrial transcripts are bound by RFL8 protein? -The RNaseI-RIPseq approach to find the in vivo binding sites of RFL8 protein on mitochondrial mRNAs via co-immunoprecipitation of 3HA tag fused in C-terminal of RFL8 protein
 
Overall design 4 samples with 2 biological replicates. normal vs transgenic comparison
Web link http://tools.ips2.u-psud.fr/CATdb
 
Contributor(s) Mireau H
Citation(s) 33878189
Submission date Feb 09, 2021
Last update date Aug 03, 2021
Contact name VĂ©ronique BRUNAUD
E-mail(s) veronique.brunaud@inrae.fr
Organization name INRA - CNRS - UPSUD
Lab IPS2
Street address rue Noetzlin
City Gif-sur-Yvette
ZIP/Postal code 91190
Country France
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (4)
GSM5071288 col0_(1)
GSM5071289 col0_(2)
GSM5071290 rfl8-3HA_(1)
This SubSeries is part of SuperSeries:
GSE166459 Nuclear compensation to a lineage-specific mitochondrial genomic rearrangement in plants
Relations
BioProject PRJNA700979
SRA SRP305503

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE166447_RAW.tar 10.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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