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Series GSE166668 Query DataSets for GSE166668
Status Public on Apr 01, 2022
Title Understanding the nitrate responsive regulatory modules in Rice [ncRNA-seq]
Organism Oryza sativa
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary To identify the differetially expressed sRNAs under nitrate stress, sRNA-seq was performed using total RNA extracted from root and seedling tissues from plants were grown in both low (0 mM) and high (100 mM) nitrate conditions. The analysis was performed in duplicates and the reads were processed and analysed using UEA sRNA workbench.
Overall design sRNA profiles in Control (10 mM), low N stress (0 mM) and high N stress (100 mM)
Contributor(s) Padubidri V S, Narjala A, Pachamuthu K
Citation(s) 35243491
Submission date Feb 12, 2021
Last update date Jul 15, 2022
Contact name Shivaprasad Padubidri V.
Phone +918023666511
Organization name National Centre for Biological Sciences, TIFR
Street address GKVK Campus, Bellary Road
City Bengaluru
State/province Karnataka
ZIP/Postal code 560065
Country India
Platforms (1)
GPL19290 Illumina HiSeq 2500 (Oryza sativa)
Samples (12)
GSM5077638 N0_Root_Rep1 [ncRNA-Seq]
GSM5077639 N0_Root_Rep2 [ncRNA-Seq]
GSM5077640 N0_Seedling_Rep1 [ncRNA-Seq]
This SubSeries is part of SuperSeries:
GSE166669 Understanding the nitrate responsive regulatory modules in Rice
BioProject PRJNA701564
SRA SRP306105

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE166668_RAW.tar 121.9 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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