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Series GSE166765 Query DataSets for GSE166765
Status Public on Feb 12, 2022
Title Plasticity in AAA+ proteases reveals substrate specificity niches
Organism Caulobacter vibrioides NA1000
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: The goal of this study is to compare RNA-seq libraries of wildtype Caulobacter crescentus with two lon deletion strains (delta lon and delta lon clpX*).
Methods: See Methods section of "Plasticity in AAA+ proteases reveals substrate specificity niches" for information regarding methods or contact lead correspondence. Briefly, Samples for RNAseq were extracted from wt and lon deletion strains grown to stationary phase.
Conclusions: Our study represents the first detailed analysis of lon deletions (delta lon and delta lon clpX*) comparison to wt caulobacter transcriptomes, with biologic replicates, generated by RNA-seq technology in stationary phas
 
Overall design RNA seq profiles for Caulobacter crescentus wildtype and lon deletion strains (delta lon and delta lon clpX*) in stationary phase
 
Contributor(s) Mahmoud SA, Aldikacti B, Chien P
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Feb 15, 2021
Last update date Feb 12, 2022
Contact name Peter Chien
E-mail(s) pchien@umass.edu
Organization name University of Massachusetts Amherst
Department Biochemistry and Molecular Biology
Lab Peter Chien
Street address 240 Thatcher Rd, Life Science Laboratories Room N325
City Amherst
State/province MA
ZIP/Postal code 01003
Country USA
 
Platforms (1)
GPL26188 Illumina NextSeq 500 (Caulobacter vibrioides NA1000)
Samples (9)
GSM5082280 WT rep 1
GSM5082281 WT rep 2
GSM5082282 WT rep 3
Relations
BioProject PRJNA701919
SRA SRP306447

Download family Format
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE166765_Compiled_final.txt.gz 52.1 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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