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Series GSE166765 Query DataSets for GSE166765
Status Public on Feb 12, 2022
Title Plasticity in AAA+ proteases reveals substrate specificity niches
Organism Caulobacter vibrioides NA1000
Experiment type Expression profiling by high throughput sequencing
Summary Purpose: The goal of this study is to compare RNA-seq libraries of wildtype Caulobacter crescentus with two lon deletion strains (delta lon and delta lon clpX*).
Methods: See Methods section of "Plasticity in AAA+ proteases reveals substrate specificity niches" for information regarding methods or contact lead correspondence. Briefly, Samples for RNAseq were extracted from wt and lon deletion strains grown to stationary phase.
Conclusions: Our study represents the first detailed analysis of lon deletions (delta lon and delta lon clpX*) comparison to wt caulobacter transcriptomes, with biologic replicates, generated by RNA-seq technology in stationary phas
Overall design RNA seq profiles for Caulobacter crescentus wildtype and lon deletion strains (delta lon and delta lon clpX*) in stationary phase
Contributor(s) Mahmoud SA, Aldikacti B, Chien P
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Feb 15, 2021
Last update date Feb 12, 2022
Contact name Peter Chien
Organization name University of Massachusetts Amherst
Department Biochemistry and Molecular Biology
Lab Peter Chien
Street address 240 Thatcher Rd, Life Science Laboratories Room N325
City Amherst
State/province MA
ZIP/Postal code 01003
Country USA
Platforms (1)
GPL26188 Illumina NextSeq 500 (Caulobacter vibrioides NA1000)
Samples (9)
GSM5082280 WT rep 1
GSM5082281 WT rep 2
GSM5082282 WT rep 3
BioProject PRJNA701919
SRA SRP306447

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Supplementary file Size Download File type/resource
GSE166765_Compiled_final.txt.gz 52.1 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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