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Status |
Public on Feb 12, 2022 |
Title |
Plasticity in AAA+ proteases reveals substrate specificity niches |
Organism |
Caulobacter vibrioides NA1000 |
Experiment type |
Expression profiling by high throughput sequencing
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Summary |
Purpose: The goal of this study is to compare RNA-seq libraries of wildtype Caulobacter crescentus with two lon deletion strains (delta lon and delta lon clpX*). Methods: See Methods section of "Plasticity in AAA+ proteases reveals substrate specificity niches" for information regarding methods or contact lead correspondence. Briefly, Samples for RNAseq were extracted from wt and lon deletion strains grown to stationary phase. Conclusions: Our study represents the first detailed analysis of lon deletions (delta lon and delta lon clpX*) comparison to wt caulobacter transcriptomes, with biologic replicates, generated by RNA-seq technology in stationary phas
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Overall design |
RNA seq profiles for Caulobacter crescentus wildtype and lon deletion strains (delta lon and delta lon clpX*) in stationary phase
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Contributor(s) |
Mahmoud SA, Aldikacti B, Chien P |
Citation missing |
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Submission date |
Feb 15, 2021 |
Last update date |
Feb 12, 2022 |
Contact name |
Peter Chien |
E-mail(s) |
pchien@umass.edu
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Organization name |
University of Massachusetts Amherst
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Department |
Biochemistry and Molecular Biology
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Lab |
Peter Chien
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Street address |
240 Thatcher Rd, Life Science Laboratories Room N325
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City |
Amherst |
State/province |
MA |
ZIP/Postal code |
01003 |
Country |
USA |
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Platforms (1) |
GPL26188 |
Illumina NextSeq 500 (Caulobacter vibrioides NA1000) |
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Samples (9)
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Relations |
BioProject |
PRJNA701919 |
SRA |
SRP306447 |