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Series GSE167044 Query DataSets for GSE167044
Status Public on Feb 28, 2021
Title 4C contact profiles of the Pcdh-b enhancers HS18-20
Organism Mus musculus
Experiment type Other
Summary We performed 4C-seq to measure the chromatin contact changes between Pcdh-b and their enhancers, HS18-20.
Overall design Chromatin contact profiles in control or RAD21-TEV cleaved cells were generated by 4C. Contents of processed data files: column 1 - the starting coordinate of the 1kb bin, 2 - the mean of values within a 2kb window, 3 - the 80th quantile of values, and 4 - the 20th quantile of values
Contributor(s) Guo Y, Wang Y, Weiss F, Merkenschlager M
Citation(s) 34006846
Submission date Feb 18, 2021
Last update date Jun 03, 2021
Contact name LMS Bioinformatics Core
Organization name MRC London Institute of Medical Sciences
Department Bioinformatics Core
Street address Hammersmith Hospital Campus, Du Cane Road
City London
ZIP/Postal code W12 0NN
Country United Kingdom
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (8)
GSM5091316 Pcdhb_Ctr_rep1
GSM5091317 Pcdhb_Ctr_rep2
GSM5091318 Pcdhb_Ctr_rep3
This SubSeries is part of SuperSeries:
GSE150130 Partial rescue of neuronal genes deregulated in CdLS by cohesin
BioProject PRJNA702784
SRA SRP307002

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE167044_Pcdhb_Ctr_rep1-4.nearcis.norm.txt.mean.scales.txt.gz 99.3 Kb (ftp)(http) TXT
GSE167044_Pcdhb_Rad21Cleaved_rep1-4.nearcis.norm.txt.mean.scales.txt.gz 99.3 Kb (ftp)(http) TXT
GSE167044_RAW.tar 740.0 Kb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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