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Series GSE168938 Query DataSets for GSE168938
Status Public on Feb 04, 2022
Title Microbiome mediated plasticity promotes thermal adaptation in Nematostella vectensis
Organism Nematostella vectensis
Experiment type Expression profiling by high throughput sequencing
Summary We wanted to infer the contribution of host vs symbiotic microbiota plasticities on thermal acclimation of the holobiont. We long-term acclimated anymals of the same clonal line to 3 different temperatures (15, 20 and 25°C) and monitored along time the changes in fitness, microbiota composition, and host transcriptome.
Overall design we submitted 15 samples of acclimated female polyps representing 5 replicates from each treatment temperature (15, 20, 25°C).
Contributor(s) Baldassarre L, Ying H, Reitzel A, Fraune S
Citation(s) 35084499
Submission date Mar 15, 2021
Last update date Mar 03, 2022
Contact name Sebastian Fraune
Phone 49 211 81 14991
Organization name Heinrich-Heine-University
Department Institute for Zoology and Organismic Interactions
Lab AG Fraune
Street address Universitätsstr. 1, Building: 26.24, Floor/Room: 02.114
City Düsseldorf
State/province North Rhine-Westphalia
ZIP/Postal code 40225
Country Germany
Platforms (1)
GPL29855 Illumina HiSeq 4000 (Nematostella vectensis)
Samples (15)
GSM5172618 15_1
GSM5172619 20_1
GSM5172620 25_1
BioProject PRJNA714634
SRA SRP310688

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Supplementary file Size Download File type/resource
GSE168938_nvec.taco_genes.gff3.gz 4.7 Mb (ftp)(http) GFF3
GSE168938_raw_gene_counts_matrix.txt.gz 1.0 Mb (ftp)(http) TXT
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