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Series GSE16916 Query DataSets for GSE16916
Status Public on Aug 15, 2009
Title The maize leaf transcriptome
Organism Zea mays
Experiment type Expression profiling by high throughput sequencing
Summary We have generated over 80 million 32 nt reads generated from RNA samples isolated from the tip and base of a developing Mo17 leaf. A comparision of these data with the maize AGP resulted in the confirmation of approximately 88% of the maize filtered gene set

Keywords: Transcriptome analysis
Overall design Examination of two different RNA samples from two different segments of a developing 3rd leaf
Contributor(s) Li P, Ponnala L, Sun Q, Brutnell TP
Citation(s) 19965430
Submission date Jul 01, 2009
Last update date May 15, 2019
Contact name Lalit Ponnala
Organization name Cornell University
Street address 616 Rhodes Hall
City Ithaca
State/province NY
ZIP/Postal code 14853
Country USA
Platforms (1)
GPL9361 Illumina Genome Analyzer II (Zea mays)
Samples (2)
GSM424271 Section1_base_Mo17
GSM424272 Section14_tip_Mo17
SRA SRP001315
BioProject PRJNA117709

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE16916_RAW.tar 1.4 Gb (http)(custom) TAR (of TXT)
GSE16916_README.txt 1.1 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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