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Series GSE170245 Query DataSets for GSE170245
Status Public on Mar 30, 2021
Title ATAC-seq from GM12878 (ENCSR095QNB)
Project ENCODE
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR095QNB/
 
Citation(s) 22955616
BioProject PRJNA63443
Submission date Mar 27, 2021
Last update date May 06, 2021
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (2)
GSM5214550 ATAC-seq from GM12878 (ENCLB907YRF)
GSM5214551 ATAC-seq from GM12878 (ENCLB584REF)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE170245_ENCFF013HLW_pseudoreplicated_peaks_GRCh38.bigBed 11.3 Mb (ftp)(http) BIGBED
GSE170245_ENCFF110QWR_IDR_ranked_peaks_GRCh38.bed.gz 10.8 Mb (ftp)(http) BED
GSE170245_ENCFF180ZAY_signal_p-value_GRCh38.bigWig 478.9 Mb (ftp)(http) BIGWIG
GSE170245_ENCFF273WUQ_IDR_ranked_peaks_GRCh38.bed.gz 11.0 Mb (ftp)(http) BED
GSE170245_ENCFF346CZA_conservative_IDR_thresholded_peaks_GRCh38.bed.gz 3.1 Mb (ftp)(http) BED
GSE170245_ENCFF470YYO_pseudoreplicated_peaks_GRCh38.bed.gz 5.2 Mb (ftp)(http) BED
GSE170245_ENCFF478ZAW_replicated_peaks_GRCh38.bed.gz 5.0 Mb (ftp)(http) BED
GSE170245_ENCFF487LOB_fold_change_over_control_GRCh38.bigWig 829.6 Mb (ftp)(http) BIGWIG
GSE170245_ENCFF662NCW_IDR_thresholded_peaks_GRCh38.bigBed 7.1 Mb (ftp)(http) BIGBED
GSE170245_ENCFF782NKO_conservative_IDR_thresholded_peaks_GRCh38.bigBed 6.3 Mb (ftp)(http) BIGBED
GSE170245_ENCFF928SQL_replicated_peaks_GRCh38.bigBed 10.9 Mb (ftp)(http) BIGBED
GSE170245_ENCFF945SYZ_IDR_thresholded_peaks_GRCh38.bed.gz 3.3 Mb (ftp)(http) BED
GSE170245_RAW.tar 1.7 Gb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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