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Series GSE17056 Query DataSets for GSE17056
Status Public on Jul 23, 2009
Title Identification of mRNAs enriched in G3BP immunoprecipitation
Organism Homo sapiens
Experiment type Expression profiling by array
Summary A phosphorylation-dependent endoribonuclease G3BP localizes in cytoplasmic stress granules (SGs). G3BP promotes SG assembly, oligomerizes, binds mRNA, and regulates levels of certain mRNAs. Transcripts bound to G3BP were identified through expression profiling of a total of 12,135 genes by immunoprecipitation (IP) with anti-G3BP or control IgG from S2-013 cells, converting the immunoprecipitated transcripts to cDNA by reverse transcription, and hybridizing these products to cDNA microarrays. Five G3BP-associated transcripts were identified.
Overall design In the study presented here, 1 immunoprecipitated sample with control IgG and 1 immunoprecipitated sample with anti-G3BP were used to acquire expression profiles of a total of 8,644 unique genes.

The supplementary file 'GSE17056_higher_aG3BP.txt' lists the differentially expressed genes.
Contributor(s) Kelly DL, Taniuchi K
Citation(s) 21266361
Submission date Jul 10, 2009
Last update date Aug 31, 2012
Contact name Keisuke Taniuchi
Phone +81-88-880-2338
Fax +81-88-880-2338
Organization name Kochi University Medical School
Street address Kohasu, Oko
City Nankoku
ZIP/Postal code 783-8505
Country Japan
Platforms (1)
GPL8842 Compugen Human Oligonucleotide Library 12K
Samples (1)
GSM426775 G3BP immunoprecipitation
This SubSeries is part of SuperSeries:
GSE17057 Identification of mRNAs modulated by knockdown of CD24 and enriched in G3BP immunoprecipitation
BioProject PRJNA122685

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17056_higher_aG3BP.txt.gz 749 b (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record
Processed data provided as supplementary file

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