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| Status |
Public on Jul 20, 2010 |
| Title |
MicroRNAs and mRNAs differentially expressed in 5 glioblastoma spheroid cultures upon ATRA treatment |
| Organism |
Homo sapiens |
| Experiment type |
Non-coding RNA profiling by array
Expression profiling by array
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| Summary |
Microarray-based gene expression analysis identified microRNAs and mRNAs differentially expressed in 5 glioblastoma spheroid cultures upon ATRA treatment.
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| Overall design |
In this study, a set of 5 glioblastoma spheroid cultures was used to acquire microRNA expression profiles, leading to the identification of differentially expressed microRNAs between untreated and ATRA-treated cultures. In this study, a set of 5 glioblastoma spheroid cultures was used to acquire expression profiles of a total of 16,651 transcripts, leading to the identification of differentially expressed genes between untreated and ATRA-treated cultures by Significance Analysis of Microarray data.
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| Contributor(s) |
Ernst A, Engel F |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
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| Submission date |
Jul 21, 2009 |
| Last update date |
Mar 21, 2012 |
| Contact name |
Aurelie Ernst |
| Organization name |
DKFZ
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| Street address |
Im Neuenheimer Feld 280
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| City |
Heidelberg |
| ZIP/Postal code |
69120 |
| Country |
Germany |
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| Platforms (2) |
| GPL6370 |
Illumina human-6 v2.0 expression beadchip (extended) |
| GPL8178 |
Illumina Human v1 MicroRNA expression beadchip |
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| Samples (20)
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| GSM431456 |
GBM Spheroid culture 1 ATRA treated (microRNA) |
| GSM431457 |
GBM Spheroid culture 2 (microRNA) |
| GSM431458 |
GBM Spheroid culture 2 ATRA treated (microRNA) |
| GSM431459 |
GBM Spheroid culture 3 (microRNA) |
| GSM431460 |
GBM Spheroid culture 3 ATRA treated (microRNA) |
| GSM431461 |
GBM Spheroid culture 4 ATRA treated (microRNA) |
| GSM431462 |
GBM Spheroid culture 4 (microRNA) |
| GSM431463 |
GBM Spheroid culture 5 ATRA treated (microRNA) |
| GSM431464 |
GBM Spheroid culture 5 (microRNA) |
| GSM431465 |
GBM Spheroid culture 1 (microRNA) |
| GSM442965 |
GBM Spheroid culture 1 ATRA treated (mRNA) |
| GSM442966 |
GBM Spheroid culture 2 (mRNA) |
| GSM442967 |
GBM Spheroid culture 2 ATRA treated (mRNA) |
| GSM442968 |
GBM Spheroid culture 3 (mRNA) |
| GSM442969 |
GBM Spheroid culture 3 ATRA treated (mRNA) |
| GSM442970 |
GBM Spheroid culture 4 ATRA treated (mRNA) |
| GSM442971 |
GBM Spheroid culture 4 (mRNA) |
| GSM442972 |
GBM Spheroid culture 5 ATRA treated (mRNA) |
| GSM442973 |
GBM Spheroid culture 5 (mRNA) |
| GSM442974 |
GBM Spheroid culture 1 (mRNA) |
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| Relations |
| BioProject |
PRJNA119197 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE17227_4139683022.sdf.gz |
4.6 Kb |
(ftp)(http) |
SDF |
| GSE17227_4139683022_fiducial_1_Red_center.tif.gz |
202.6 Kb |
(ftp)(http) |
TIFF |
| GSE17227_4139683022_fiducial_2_Red_center.tif.gz |
203.0 Kb |
(ftp)(http) |
TIFF |
| GSE17227_4139683022_fiducial_3_Red_center.tif.gz |
202.1 Kb |
(ftp)(http) |
TIFF |
| GSE17227_RAW.tar |
1.2 Gb |
(http)(custom) |
TAR (of CSV, IDAT, LOCS, TIFF, TXT, XML) |
| Processed data included within Sample table |
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