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Series GSE172431 Query DataSets for GSE172431
Status Public on Sep 08, 2022
Title Genome-wide H3k27ac levels following FOXA1 KO in UMUC-1 human bladder cancer cells [ChIP-seq]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report areas of H3K27ac modification in both wild-type (parental) UMUC-1 and UMUC-1 FOXA1 KO bladder cancer cells.
 
Overall design Examination of one histone modification in parental and FOXA1 KO UMUC-1 cells.
 
Contributor(s) DeGraff DJ, Al-Ahmadie H, Hu W, Warrick J
Citation(s) 36323682
Submission date Apr 20, 2021
Last update date Nov 17, 2022
Contact name WENHUO HU
E-mail(s) huwenhuo@gmail.com, huw@mskcc.org
Phone 6468882468
Organization name MEMORIAL SLOAN KETTERING CANCER CENTER
Department HOPP
Lab Christopher Park
Street address 1275 YORK AVENUE
City NEW YORK
State/province NEW YORK
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (5)
GSM5255986 ChIPSEQ_Ctrl_H3K27Ac_rep1
GSM5255987 ChIPSEQ_Ctrl_H3K27Ac_rep2
GSM5255988 ChIPSEQ_FOXA1KO_H3K27Ac_rep1
This SubSeries is part of SuperSeries:
GSE172433 Genome-wide H3k27ac levels following FOXA1 KO in UMUC-1 human bladder cancer cells
Relations
BioProject PRJNA723306
SRA SRP315565

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172431_ChIPSEQ_Ctrl_H3K27Ac_peaks.tsv.gz 1.2 Mb (ftp)(http) TSV
GSE172431_ChIPSEQ_FOXA1KO_H3K27Ac_peaks.tsv.gz 1.2 Mb (ftp)(http) TSV
GSE172431_ChIPSEQ_Pooled_Input_peaks.tsv.gz 55.9 Kb (ftp)(http) TSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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