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Series GSE172597 Query DataSets for GSE172597
Status Public on Apr 22, 2021
Title ATAC-seq from G1E (ENCSR280ZDP)
Project Mouse ENCODE
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary PSU mouse G1E 50,000 cells ATAC-seq

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR280ZDP/
 
Citation(s) 22955616
BioProject PRJNA63471
Submission date Apr 21, 2021
Last update date May 07, 2021
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (2)
GSM5258418 ATAC-seq from G1E (ENCLB898MFQ)
GSM5258419 ATAC-seq from G1E (ENCLB427FAG)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172597_ENCFF154HWR_replicated_peaks_mm10.bed.gz 1.2 Mb (ftp)(http) BED
GSE172597_ENCFF157AVX_pseudoreplicated_peaks_mm10.bed.gz 1.2 Mb (ftp)(http) BED
GSE172597_ENCFF164VOI_IDR_ranked_peaks_mm10.bed.gz 2.4 Mb (ftp)(http) BED
GSE172597_ENCFF174SSV_conservative_IDR_thresholded_peaks_mm10.bed.gz 564.2 Kb (ftp)(http) BED
GSE172597_ENCFF279XEV_replicated_peaks_mm10.bigBed 2.8 Mb (ftp)(http) BIGBED
GSE172597_ENCFF316ZKR_replicated_peaks_mm10.bigBed 6.1 Mb (ftp)(http) BIGBED
GSE172597_ENCFF331LHP_signal_p-value_mm10.bigWig 195.1 Mb (ftp)(http) BIGWIG
GSE172597_ENCFF369KYS_pseudoreplicated_peaks_mm10.bigBed 2.8 Mb (ftp)(http) BIGBED
GSE172597_ENCFF393WYK_IDR_thresholded_peaks_mm10.bed.gz 576.3 Kb (ftp)(http) BED
GSE172597_ENCFF735DAQ_replicated_peaks_mm10.bed.gz 3.3 Mb (ftp)(http) BED
GSE172597_ENCFF773AHY_conservative_IDR_thresholded_peaks_mm10.bigBed 1.5 Mb (ftp)(http) BIGBED
GSE172597_ENCFF852AQX_IDR_ranked_peaks_mm10.bed.gz 2.4 Mb (ftp)(http) BED
GSE172597_ENCFF852SDC_fold_change_over_control_mm10.bigWig 227.1 Mb (ftp)(http) BIGWIG
GSE172597_ENCFF899WNE_IDR_thresholded_peaks_mm10.bigBed 1.5 Mb (ftp)(http) BIGBED
GSE172597_RAW.tar 809.1 Mb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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