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Series GSE172910

Query DataSets for GSE172910

Status

Public on Apr 22, 2021

Title

ATAC-seq from foreskin keratinocyte (ENCSR923WGJ)

Project

ENCODE

Organism

Homo sapiens

Experiment type

Genome binding/occupancy profiling by high throughput sequencing

Summary

ATAC-seq on primary keratinocytes in day 4.5 of differentiation

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf

Overall design

https://www.encodeproject.org/ENCSR923WGJ/

Citation(s)

22955616

BioProject

PRJNA63443

Submission date

Apr 21, 2021

Last update date

Aug 03, 2021

Contact name

ENCODE DCC

E-mail(s)

encode-help@lists.stanford.edu

Organization name

ENCODE DCC

Street address

300 Pasteur Dr

City

Stanford

State/province

ZIP/Postal code

94305-5120

Country

USA

Platforms (1)

GPL20301

Illumina HiSeq 4000 (Homo sapiens)

Samples (11)

More...

GSM5259045	ATAC-seq from foreskin keratinocyte (ENCLB628QOF)
GSM5259046	ATAC-seq from foreskin keratinocyte (ENCLB633BPS)
GSM5259047	ATAC-seq from foreskin keratinocyte (ENCLB097FAS)

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE172910_ENCFF006FVI_IDR_thresholded_peaks_GRCh38.bigBed	7.7 Mb	(ftp)(http)	BIGBED
GSE172910_ENCFF057XVO_replicated_peaks_GRCh38.bed.gz	6.1 Mb	(ftp)(http)	BED
GSE172910_ENCFF066DYF_signal_p-value_GRCh38.bigWig	946.6 Mb	(ftp)(http)	BIGWIG
GSE172910_ENCFF157EMV_IDR_thresholded_peaks_GRCh38.bed.gz	3.7 Mb	(ftp)(http)	BED
GSE172910_ENCFF176IYE_IDR_thresholded_peaks_GRCh38.bed.gz	3.1 Mb	(ftp)(http)	BED
GSE172910_ENCFF245BXW_IDR_thresholded_peaks_GRCh38.bed.gz	3.0 Mb	(ftp)(http)	BED
GSE172910_ENCFF314UGP_pseudoreplicated_peaks_GRCh38.bed.gz	5.7 Mb	(ftp)(http)	BED
GSE172910_ENCFF334UBH_IDR_thresholded_peaks_GRCh38.bigBed	7.4 Mb	(ftp)(http)	BIGBED
GSE172910_ENCFF336CEZ_pseudoreplicated_peaks_GRCh38.bed.gz	5.5 Mb	(ftp)(http)	BED
GSE172910_ENCFF348ACI_conservative_IDR_thresholded_peaks_GRCh38.bed.gz	3.6 Mb	(ftp)(http)	BED
GSE172910_ENCFF392MLJ_IDR_thresholded_peaks_GRCh38.bigBed	8.8 Mb	(ftp)(http)	BIGBED
GSE172910_ENCFF405JLE_conservative_IDR_thresholded_peaks_GRCh38.bigBed	8.4 Mb	(ftp)(http)	BIGBED
GSE172910_ENCFF475SGP_fold_change_over_control_GRCh38.bigWig	1.2 Gb	(ftp)(http)	BIGWIG
GSE172910_ENCFF494XZW_signal_p-value_GRCh38.bigWig	1.6 Gb	(ftp)(http)	BIGWIG
GSE172910_ENCFF495MPQ_pseudoreplicated_peaks_GRCh38.bigBed	12.8 Mb	(ftp)(http)	BIGBED
GSE172910_ENCFF523WJI_pseudoreplicated_peaks_GRCh38.bigBed	14.2 Mb	(ftp)(http)	BIGBED
GSE172910_ENCFF551QRB_IDR_ranked_peaks_GRCh38.bed.gz	12.0 Mb	(ftp)(http)	BED
GSE172910_ENCFF598JYR_signal_p-value_GRCh38.bigWig	895.4 Mb	(ftp)(http)	BIGWIG
GSE172910_ENCFF693IOI_IDR_ranked_peaks_GRCh38.bed.gz	11.5 Mb	(ftp)(http)	BED
GSE172910_ENCFF713KOF_pseudoreplicated_peaks_GRCh38.bigBed	13.2 Mb	(ftp)(http)	BIGBED
GSE172910_ENCFF774DXD_IDR_ranked_peaks_GRCh38.bed.gz	13.1 Mb	(ftp)(http)	BED
GSE172910_ENCFF803YOQ_replicated_peaks_GRCh38.bigBed	13.7 Mb	(ftp)(http)	BIGBED
GSE172910_ENCFF893FVN_fold_change_over_control_GRCh38.bigWig	1.4 Gb	(ftp)(http)	BIGWIG
GSE172910_ENCFF906ASK_pseudoreplicated_peaks_GRCh38.bed.gz	6.2 Mb	(ftp)(http)	BED
GSE172910_ENCFF925OLH_IDR_ranked_peaks_GRCh38.bed.gz	13.0 Mb	(ftp)(http)	BED
GSE172910_ENCFF968DIW_fold_change_over_control_GRCh38.bigWig	2.2 Gb	(ftp)(http)	BIGWIG
GSE172910_RAW.tar	30.0 Kb	(http)(custom)	TAR (of TXT)
SRA Run Selector
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record