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Series GSE172992 Query DataSets for GSE172992
Status Public on Apr 22, 2021
Title ATAC-seq from G1E-ER4 (ENCSR428BSK)
Project Mouse ENCODE
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary PSU mouse G1E-ER4+E2 50,000 cells ATAC-seq

For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf
 
Overall design https://www.encodeproject.org/ENCSR428BSK/
 
Citation(s) 22955616
BioProject PRJNA63471
Submission date Apr 21, 2021
Last update date May 07, 2021
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (2)
GSM5259181 ATAC-seq from G1E-ER4 (ENCLB059TNV)
GSM5259182 ATAC-seq from G1E-ER4 (ENCLB025IJK)

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE172992_ENCFF142ZIU_replicated_peaks_mm10.bed.gz 3.9 Mb (ftp)(http) BED
GSE172992_ENCFF185VMF_conservative_IDR_thresholded_peaks_mm10.bigBed 1.6 Mb (ftp)(http) BIGBED
GSE172992_ENCFF315LKF_replicated_peaks_mm10.bigBed 8.6 Mb (ftp)(http) BIGBED
GSE172992_ENCFF370ZBZ_IDR_thresholded_peaks_mm10.bigBed 1.6 Mb (ftp)(http) BIGBED
GSE172992_ENCFF390MFE_signal_p-value_mm10.bigWig 277.1 Mb (ftp)(http) BIGWIG
GSE172992_ENCFF446ZIZ_conservative_IDR_thresholded_peaks_mm10.bed.gz 646.1 Kb (ftp)(http) BED
GSE172992_ENCFF506GRR_pseudoreplicated_peaks_mm10.bigBed 3.1 Mb (ftp)(http) BIGBED
GSE172992_ENCFF531NYY_pseudoreplicated_peaks_mm10.bed.gz 1.4 Mb (ftp)(http) BED
GSE172992_ENCFF546VXW_IDR_ranked_peaks_mm10.bed.gz 2.9 Mb (ftp)(http) BED
GSE172992_ENCFF564VCY_IDR_ranked_peaks_mm10.bed.gz 2.9 Mb (ftp)(http) BED
GSE172992_ENCFF595ULK_replicated_peaks_mm10.bigBed 3.1 Mb (ftp)(http) BIGBED
GSE172992_ENCFF718XPN_fold_change_over_control_mm10.bigWig 319.6 Mb (ftp)(http) BIGWIG
GSE172992_ENCFF880DUF_replicated_peaks_mm10.bed.gz 1.4 Mb (ftp)(http) BED
GSE172992_ENCFF906IFY_IDR_thresholded_peaks_mm10.bed.gz 664.3 Kb (ftp)(http) BED
GSE172992_RAW.tar 1.1 Gb (http)(custom) TAR (of BED, BIGBED, BIGWIG, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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