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Series GSE173133 Query DataSets for GSE173133
Status Public on Apr 30, 2023
Title Genome-wide maps of chromatin state from secondary murine BM Tx transduced with BRSST gRNA +/- sgEzh2 [ChIP-seq]
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary To decipher the role of Ezh2 mutations in leukemia we transplanted mice secondarily with BRSST (Bcor, Runx1, Sh2b3, Stag2, Tet2) sgRNAs with or without sgEzh2 to observe development of myeloid leukemia. Whole BM was used for ChIP-Seq analysis of histone modifications.
Overall design Examination of H3K27me3 and H3K4me3 in whole BM of transplanted, leukemic mice.
Contributor(s) Borchert D, Heckl D
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Submission date Apr 22, 2021
Last update date May 02, 2023
Contact name Dorit Borchert
Organization name Hannover Medical School
Department Pediatric Hematology and Oncology
Street address Carl-Neuberg-Str. 1
City Hannover
ZIP/Postal code 30625
Country Germany
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (6)
GSM5260597 BRSST+sgEzh2 1% input
GSM5260598 BRSST+sgLuc 1% input
GSM5260599 BRSST+sgEzh2 H3K4me3
This SubSeries is part of SuperSeries:
GSE173497 Oncofetal gene reactivation drives EZH2-mutant myeloid leukemia pathogenesis
BioProject PRJNA723864
SRA SRP315925

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173133_RAW.tar 1021.8 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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