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Series GSE173208 Query DataSets for GSE173208
Status Public on Jun 30, 2023
Title Comprehensive characterization of cistrome and epicistrome involved in fruit ripening [ChIP-seq]
Organism Solanum lycopersicum
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Here we generated ChIP-seq data of a tomato ERF family TF Sl-ERF_F_4 in red fruit stage and green fruit stage to validate the accuracy of DAP-seq data.
 
Overall design ChIP-seq data of Sl-ERF-F_4 extracted from tomato fruit in green stage and red stage.
 
Contributor(s) Lang Z
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 23, 2021
Last update date Jun 30, 2023
Contact name Yu Ma
E-mail(s) yuma@psc.ac.cn
Organization name Shanghai Center for Plant Stress Biology
Street address Address: No. 3888 Chenhua Road, Shanghai 201602, P. R. China
City Shanghai
ZIP/Postal code 201602
Country China
 
Platforms (1)
GPL29032 NextSeq 550 (Solanum lycopersicum)
Samples (12)
GSM5261902 AC-25
GSM5261903 AC-25_input
GSM5261904 AC-38
This SubSeries is part of SuperSeries:
GSE173213 Comprehensive characterization of cistrome and epicistrome involved in fruit ripening
Relations
BioProject PRJNA724698
SRA SRP316057

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173208_ERF_F4-25-1_peaks_rmAC.txt.gz 6.1 Kb (ftp)(http) TXT
GSE173208_ERF_F4-25-2_peaks_rmAC.txt.gz 34.2 Kb (ftp)(http) TXT
GSE173208_ERF_F4-38-1_q20_peaks_rmAC.txt.gz 427.3 Kb (ftp)(http) TXT
GSE173208_ERF_F4-38-2_q20_peaks_rmAC.txt.gz 432.6 Kb (ftp)(http) TXT
GSE173208_RAW.tar 1.3 Gb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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