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Series GSE173375 Query DataSets for GSE173375
Status Public on Apr 27, 2021
Title RNA-seq analysis of dark-induced senescence of the leaves of Ran-GDP and Ran-GTP overexpression transgenic plants
Organism Arabidopsis thaliana
Experiment type Expression profiling by high throughput sequencing
Summary Comparing transcriptome of the leaves of Ran-GDP and Ran-GTP overexpression transgenic plants before and after dark incubation, we discovered 851 differentially expressed genes that designated as Ran-regulated genes. The RNA-seq result confirmed the early senescence phenotype of Ran-GTP overexpression plants and the up-regulation of several signaling pathways, implied their positive roles in Ran-regulated senescence and suggest potential downstream targets of Ran. This study provided a mechanism that senescence process could be regulated by nuclear transportation machinery in Arabidopsis.
 
Overall design The RNA expression profiles of the fifth and sixth leaves of 4 week-old RanT27N (Ran-GDP) and RanG22V (Ran-GTP) overexpression transgenic plants before and after 3 days in darkness were assessed.
 
Contributor(s) Pham G, Kim S
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Submission date Apr 26, 2021
Last update date Jan 31, 2024
Contact name Soo-Hwan Kim
Organization name Yonsei University
Department DIVISION OF BIOLOGICAL SCIENCE AND TECHNOLOGY
Lab Plant molecular developmental genetics
Street address 1, Yeonsedae-gil, Heungeop-myeon
City Wonju-si
State/province Gangwon-do
ZIP/Postal code 26493
Country South Korea
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (10)
GSM5266683 Col D0_rep1
GSM5266684 Col D0_rep2
GSM5266685 RanT27N D0_rep1
Relations
BioProject PRJNA725265
SRA SRP316441

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173375_RAW.tar 1.5 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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