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Series GSE17358 Query DataSets for GSE17358
Status Public on Jul 28, 2009
Title Transcriptional termini of genes on chromosomes 21-22 (RNA mapping)
Project ENCODE
Organism Homo sapiens
Experiment type Expression profiling by genome tiling array
Summary The purpose of these experiments was to determine the 5' and 3' transcriptional termini of genes on chromosomes 21-22. Towards this end, we mapped the poly A + RNA isolated from 12 normal tissues and four cell lines.

For data usage terms and conditions, please refer to and
Overall design polyA+ RNAs from 11 tissues (Brain Frontal Lobe, Brain Hippocampus, Brain Hypothalamus, Cerebellum, Ovary, Placenta, Prostate, Testis, Fetal Kidney, Fetal Spleen, Fetal Thymus; all from BD Clontech) and 5 cell lines (GM06990, HeLaS3, HepG2, K562, tert-BJ) using the BD SMARTTM RACE cDNA amplification kit (BD Clontech Cat. No.634914). A single array with no replicates was run for each sample with a pool of ~23-24 RACE reactions per sample.
Web link
Contributor(s) Gingeras T, Zaleski C
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BioProject PRJNA30709
Submission date Jul 27, 2009
Last update date Jun 28, 2012
Contact name Chris Zaleski
Organization name Cold Spring Harbor Labs
Lab Gingeras
Street address 500 Sunnyside Blvd
City Woodbury
State/province NY
ZIP/Postal code 11797
Country USA
Platforms (1)
GPL5715 AFFYMETRIX Human Chromosomes 21 & 22 v2.0
Samples (16)
GSM433900 BrCereb_RWP+
GSM433901 BrFrontLb_RWP+
GSM433902 BrHppC_RWP+

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE17358_RAW.tar 1.1 Gb (http)(custom) TAR (of BAR, CEL)
Processed data provided as supplementary file

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