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Series GSE173834 Query DataSets for GSE173834
Status Public on May 05, 2021
Title The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution
Organism Arabidopsis thaliana
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Root cells from Arabidopsis seedlings profiled with single-cell ATAC-seq.
 
Overall design single-cell ATAC-seq experiments were performed on the 10X Genomics platform
 
Contributor(s) Dorrity MW, Queitsch C, Cuperus J
Citation(s) 34099698
Submission date May 04, 2021
Last update date Jul 13, 2022
Contact name Michael Dorrity
Organization name University of Washington
Street address 3720 15th Ave NE, Foege Building, Room S313
City Seattle
State/province Washington
ZIP/Postal code 98105
Country USA
 
Platforms (1)
GPL19580 Illumina NextSeq 500 (Arabidopsis thaliana)
Samples (1)
GSM5281420 Root cells from Arabidopsis seedlings
Relations
BioProject PRJNA727303
SRA SRP318614

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE173834_RAW.tar 898.1 Mb (http)(custom) TAR (of RDS)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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