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Series GSE174171

Query DataSets for GSE174171

Status

Public on May 31, 2021

Title

Genetic Dissection of the RNA Polymerase II Transcription Cycle with ChRO-seq from F1 hybrid mice

Organism

Experiment type

Expression profiling by high throughput sequencing
Other

Summary

How DNA sequence affects the dynamics and position of RNA Polymerase II during transcription remains poorly understood. Here we used naturally occurring genetic variation in F1 hybrid mice to explore how DNA sequence differences affect the genome-wide distribution of Pol II. We measured the position and orientation of Pol II in eight organs collected from heterozygous F1 hybrid mice using ChRO-seq. Our data revealed a strong genetic basis for the precise coordinates of transcription initiation and promoter proximal pause, which was composed of both existing and novel DNA sequence motifs, allowing us to redefine molecular models of both core transcriptional processes. Our results implicate the strength of base pairing between A-T or G-C dinucleotides as key determinants to the position of Pol II initiation and pause. We reveal substantial and heritable differences in the position of transcription termination, which frequently do not affect the composition of the mature mRNA. Finally, we identified frequent, organ-specific changes in transcription that affect mRNA and ncRNA expression across broad genomic domains. Collectively, we reveal how DNA sequences shape core transcriptional processes at single nucleotide resolution in mammals.

Overall design

We analyzed ChRO-seq data from eight organs from 7 independent reciprocal crosss of C57BL/6 (B6) and Castaneus F1 hybrid mices.
We analyzed RNA-seq data from brain and liver from C57BL/6 (B6) and Castaneus F1 hybrid mices.

Contributor(s)

Citation(s)

Shao-Pei Chou, Adriana K. Alexander, Edward J. Rice, Lauren A Choate, Paula E Cohen, and Charles G. Danko. Genetic Dissection of the RNA Polymerase II Transcription Cycle. bioRxiv 2021.05.23.445279. doi:https://doi.org/10.1101/2021.05.23.445279

Submission date

May 10, 2021

Last update date

Jul 20, 2022

Contact name

Charles G. Danko

E-mail(s)

dankoc@gmail.com

Organization name

Cornell University

Department

Baker Institute for Animal Health, College of Veterinary Medicine

Street address

Hungerford Hill Rd.

City

Ithaca

State/province

NY

ZIP/Postal code

14853

Country

USA

Platforms (2)

GPL19057	Illumina NextSeq 500 (Mus musculus)
GPL21103	Illumina HiSeq 4000 (Mus musculus)

Samples (67)

More...

GSM5288410	BN_MB6_A
GSM5288411	BN_MB6_F
GSM5288412	BN_MB6_G

Relations

BioProject

SRA

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML
Series Matrix File(s)	TXT

Supplementary file	Size	Download	File type/resource
GSE174171_BN_MB6_all_R1.B6.bowtie.gz	7.2 Gb	(ftp)(http)	BOWTIE
GSE174171_BN_MB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	15.3 Mb	(ftp)(http)	BW
GSE174171_BN_MB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	15.6 Mb	(ftp)(http)	BW
GSE174171_BN_MB6_all_R1.CAST.bowtie.gz	7.2 Gb	(ftp)(http)	BOWTIE
GSE174171_BN_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	15.2 Mb	(ftp)(http)	BW
GSE174171_BN_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	15.3 Mb	(ftp)(http)	BW
GSE174171_BN_MB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	74.2 Mb	(ftp)(http)	BW
GSE174171_BN_MB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	75.1 Mb	(ftp)(http)	BW
GSE174171_BN_PB6_all_R1.B6.bowtie.gz	5.6 Gb	(ftp)(http)	BOWTIE
GSE174171_BN_PB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	12.5 Mb	(ftp)(http)	BW
GSE174171_BN_PB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	12.7 Mb	(ftp)(http)	BW
GSE174171_BN_PB6_all_R1.CAST.bowtie.gz	5.6 Gb	(ftp)(http)	BOWTIE
GSE174171_BN_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	12.3 Mb	(ftp)(http)	BW
GSE174171_BN_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	12.4 Mb	(ftp)(http)	BW
GSE174171_BN_PB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	61.2 Mb	(ftp)(http)	BW
GSE174171_BN_PB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	62.0 Mb	(ftp)(http)	BW
GSE174171_BN_geneWithInATwindows_stability.txt.gz	33.0 Kb	(ftp)(http)	TXT
GSE174171_GI_MB6_all_R1.B6.bowtie.gz	2.4 Gb	(ftp)(http)	BOWTIE
GSE174171_GI_MB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	594.8 Kb	(ftp)(http)	BW
GSE174171_GI_MB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	7.0 Mb	(ftp)(http)	BW
GSE174171_GI_MB6_all_R1.CAST.bowtie.gz	2.4 Gb	(ftp)(http)	BOWTIE
GSE174171_GI_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	6.9 Mb	(ftp)(http)	BW
GSE174171_GI_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	6.9 Mb	(ftp)(http)	BW
GSE174171_GI_MB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	31.0 Mb	(ftp)(http)	BW
GSE174171_GI_MB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	31.6 Mb	(ftp)(http)	BW
GSE174171_GI_PB6_all_R1.B6.bowtie.gz	3.5 Gb	(ftp)(http)	BOWTIE
GSE174171_GI_PB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	8.6 Mb	(ftp)(http)	BW
GSE174171_GI_PB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	8.6 Mb	(ftp)(http)	BW
GSE174171_GI_PB6_all_R1.CAST.bowtie.gz	3.5 Gb	(ftp)(http)	BOWTIE
GSE174171_GI_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	8.4 Mb	(ftp)(http)	BW
GSE174171_GI_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	8.5 Mb	(ftp)(http)	BW
GSE174171_GI_PB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	38.4 Mb	(ftp)(http)	BW
GSE174171_GI_PB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	39.2 Mb	(ftp)(http)	BW
GSE174171_HT_MB6_all_R1.B6.bowtie.gz	483.1 Mb	(ftp)(http)	BOWTIE
GSE174171_HT_MB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	1.3 Mb	(ftp)(http)	BW
GSE174171_HT_MB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	1.3 Mb	(ftp)(http)	BW
GSE174171_HT_MB6_all_R1.CAST.bowtie.gz	482.6 Mb	(ftp)(http)	BOWTIE
GSE174171_HT_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	1.3 Mb	(ftp)(http)	BW
GSE174171_HT_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	1.3 Mb	(ftp)(http)	BW
GSE174171_HT_MB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	7.8 Mb	(ftp)(http)	BW
GSE174171_HT_MB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	6.3 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5F6_R1.identical.3prime.1bp.map2ref_minus.bw	36.6 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5F6_R1.identical.3prime.1bp.map2ref_plus.bw	29.8 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5F6_R1.identical.5prime.1bp.map2ref_minus.bw	29.3 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5F6_R1.identical.5prime.1bp.map2ref_plus.bw	29.3 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5F6_R1_B6.specific.3prime.1bp.map2ref_minus.bw	5.8 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5F6_R1_B6.specific.3prime.1bp.map2ref_plus.bw	5.7 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5F6_R1_B6.specific.5prime.1bp.map2ref_minus.bw	5.7 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5F6_R1_B6.specific.5prime.1bp.map2ref_plus.bw	5.7 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5F6_R1_CAST.specific.3prime.1bp.map2ref_minus.bw	5.7 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5F6_R1_CAST.specific.3prime.1bp.map2ref_plus.bw	5.7 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5F6_R1_CAST.specific.5prime.1bp.map2ref_minus.bw	5.7 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5F6_R1_CAST.specific.5prime.1bp.map2ref_plus.bw	5.6 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_F5_dedup_R1.B6.bowtie.gz	1.2 Gb	(ftp)(http)	BOWTIE
GSE174171_HT_PB6_F5_dedup_R1.CAST.bowtie.gz	1.2 Gb	(ftp)(http)	BOWTIE
GSE174171_HT_PB6_F6_dedup_R1.B6.bowtie.gz	1.4 Gb	(ftp)(http)	BOWTIE
GSE174171_HT_PB6_F6_dedup_R1.CAST.bowtie.gz	1.4 Gb	(ftp)(http)	BOWTIE
GSE174171_HT_PB6_all_R1.B6.bowtie.gz	3.1 Gb	(ftp)(http)	BOWTIE
GSE174171_HT_PB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	6.8 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	533.0 Kb	(ftp)(http)	BW
GSE174171_HT_PB6_all_R1.CAST.bowtie.gz	3.1 Gb	(ftp)(http)	BOWTIE
GSE174171_HT_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	6.7 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	6.6 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	31.9 Mb	(ftp)(http)	BW
GSE174171_HT_PB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	31.9 Mb	(ftp)(http)	BW
GSE174171_KD_MB6_all_R1.B6.bowtie.gz	3.1 Gb	(ftp)(http)	BOWTIE
GSE174171_KD_MB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	7.6 Mb	(ftp)(http)	BW
GSE174171_KD_MB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	7.7 Mb	(ftp)(http)	BW
GSE174171_KD_MB6_all_R1.CAST.bowtie.gz	3.1 Gb	(ftp)(http)	BOWTIE
GSE174171_KD_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	7.5 Mb	(ftp)(http)	BW
GSE174171_KD_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	7.5 Mb	(ftp)(http)	BW
GSE174171_KD_MB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	37.2 Mb	(ftp)(http)	BW
GSE174171_KD_MB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	37.9 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5F6_R1.identical.3prime.1bp.map2ref_minus.bw	32.7 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5F6_R1.identical.3prime.1bp.map2ref_plus.bw	33.2 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5F6_R1.identical.5prime.1bp.map2ref_minus.bw	31.7 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5F6_R1.identical.5prime.1bp.map2ref_plus.bw	32.2 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5F6_R1_B6.specific.3prime.1bp.map2ref_minus.bw	6.8 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5F6_R1_B6.specific.3prime.1bp.map2ref_plus.bw	6.8 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5F6_R1_B6.specific.5prime.1bp.map2ref_minus.bw	6.7 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5F6_R1_B6.specific.5prime.1bp.map2ref_plus.bw	6.8 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5F6_R1_CAST.specific.3prime.1bp.map2ref_minus.bw	6.7 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5F6_R1_CAST.specific.3prime.1bp.map2ref_plus.bw	6.8 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5F6_R1_CAST.specific.5prime.1bp.map2ref_minus.bw	6.7 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5F6_R1_CAST.specific.5prime.1bp.map2ref_plus.bw	6.7 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_F5_dedup_R1.B6.bowtie.gz	1.3 Gb	(ftp)(http)	BOWTIE
GSE174171_KD_PB6_F5_dedup_R1.CAST.bowtie.gz	1.3 Gb	(ftp)(http)	BOWTIE
GSE174171_KD_PB6_F6_dedup_R1.B6.bowtie.gz	1.1 Gb	(ftp)(http)	BOWTIE
GSE174171_KD_PB6_F6_dedup_R1.CAST.bowtie.gz	1.1 Gb	(ftp)(http)	BOWTIE
GSE174171_KD_PB6_all_R1.B6.bowtie.gz	3.0 Gb	(ftp)(http)	BOWTIE
GSE174171_KD_PB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	8.2 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	8.3 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_all_R1.CAST.bowtie.gz	3.0 Gb	(ftp)(http)	BOWTIE
GSE174171_KD_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	8.1 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	8.1 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	39.1 Mb	(ftp)(http)	BW
GSE174171_KD_PB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	39.7 Mb	(ftp)(http)	BW
GSE174171_LV_MB6_all_R1.B6.bowtie.gz	4.8 Gb	(ftp)(http)	BOWTIE
GSE174171_LV_MB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	10.4 Mb	(ftp)(http)	BW
GSE174171_LV_MB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	10.6 Mb	(ftp)(http)	BW
GSE174171_LV_MB6_all_R1.CAST.bowtie.gz	4.8 Gb	(ftp)(http)	BOWTIE
GSE174171_LV_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	10.3 Mb	(ftp)(http)	BW
GSE174171_LV_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	10.4 Mb	(ftp)(http)	BW
GSE174171_LV_MB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	49.8 Mb	(ftp)(http)	BW
GSE174171_LV_MB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	50.9 Mb	(ftp)(http)	BW
GSE174171_LV_PB6_all_R1.B6.bowtie.gz	6.9 Gb	(ftp)(http)	BOWTIE
GSE174171_LV_PB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	13.1 Mb	(ftp)(http)	BW
GSE174171_LV_PB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	13.3 Mb	(ftp)(http)	BW
GSE174171_LV_PB6_all_R1.CAST.bowtie.gz	6.9 Gb	(ftp)(http)	BOWTIE
GSE174171_LV_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	12.9 Mb	(ftp)(http)	BW
GSE174171_LV_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	13.1 Mb	(ftp)(http)	BW
GSE174171_LV_PB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	74.6 Mb	(ftp)(http)	BW
GSE174171_LV_PB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	76.0 Mb	(ftp)(http)	BW
GSE174171_LV_geneWithInATwindows_stability.txt.gz	37.3 Kb	(ftp)(http)	TXT
GSE174171_SK_MB6_all_R1.B6.bowtie.gz	1.0 Gb	(ftp)(http)	BOWTIE
GSE174171_SK_MB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	2.2 Mb	(ftp)(http)	BW
GSE174171_SK_MB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	2.2 Mb	(ftp)(http)	BW
GSE174171_SK_MB6_all_R1.CAST.bowtie.gz	1.0 Gb	(ftp)(http)	BOWTIE
GSE174171_SK_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	2.2 Mb	(ftp)(http)	BW
GSE174171_SK_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	2.1 Mb	(ftp)(http)	BW
GSE174171_SK_MB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	12.8 Mb	(ftp)(http)	BW
GSE174171_SK_MB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	12.9 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5F6_R1.identical.3prime.1bp.map2ref_minus.bw	32.2 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5F6_R1.identical.3prime.1bp.map2ref_plus.bw	32.7 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5F6_R1.identical.5prime.1bp.map2ref_minus.bw	31.4 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5F6_R1.identical.5prime.1bp.map2ref_plus.bw	31.9 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5F6_R1_B6.specific.3prime.1bp.map2ref_minus.bw	4.7 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5F6_R1_B6.specific.3prime.1bp.map2ref_plus.bw	4.6 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5F6_R1_B6.specific.5prime.1bp.map2ref_minus.bw	4.6 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5F6_R1_B6.specific.5prime.1bp.map2ref_plus.bw	4.6 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5F6_R1_CAST.specific.3prime.1bp.map2ref_minus.bw	4.6 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5F6_R1_CAST.specific.3prime.1bp.map2ref_plus.bw	4.7 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5F6_R1_CAST.specific.5prime.1bp.map2ref_minus.bw	4.6 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5F6_R1_CAST.specific.5prime.1bp.map2ref_plus.bw	4.6 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_F5_dedup_R1.B6.bowtie.gz	1.2 Gb	(ftp)(http)	BOWTIE
GSE174171_SK_PB6_F5_dedup_R1.CAST.bowtie.gz	1.2 Gb	(ftp)(http)	BOWTIE
GSE174171_SK_PB6_F6_dedup_R1.B6.bowtie.gz	1.1 Gb	(ftp)(http)	BOWTIE
GSE174171_SK_PB6_F6_dedup_R1.CAST.bowtie.gz	1.1 Gb	(ftp)(http)	BOWTIE
GSE174171_SK_PB6_all_R1.B6.bowtie.gz	2.2 Gb	(ftp)(http)	BOWTIE
GSE174171_SK_PB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	4.4 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	4.4 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_all_R1.CAST.bowtie.gz	2.2 Gb	(ftp)(http)	BOWTIE
GSE174171_SK_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	4.3 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	4.3 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	21.0 Mb	(ftp)(http)	BW
GSE174171_SK_PB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	21.3 Mb	(ftp)(http)	BW
GSE174171_SP_MB6_all_R1.B6.bowtie.gz	3.1 Gb	(ftp)(http)	BOWTIE
GSE174171_SP_MB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	7.0 Mb	(ftp)(http)	BW
GSE174171_SP_MB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	7.0 Mb	(ftp)(http)	BW
GSE174171_SP_MB6_all_R1.CAST.bowtie.gz	3.1 Gb	(ftp)(http)	BOWTIE
GSE174171_SP_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	6.9 Mb	(ftp)(http)	BW
GSE174171_SP_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	6.9 Mb	(ftp)(http)	BW
GSE174171_SP_MB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	36.4 Mb	(ftp)(http)	BW
GSE174171_SP_MB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	36.9 Mb	(ftp)(http)	BW
GSE174171_SP_PB6_all_R1.B6.bowtie.gz	4.5 Gb	(ftp)(http)	BOWTIE
GSE174171_SP_PB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	8.6 Mb	(ftp)(http)	BW
GSE174171_SP_PB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	8.7 Mb	(ftp)(http)	BW
GSE174171_SP_PB6_all_R1.CAST.bowtie.gz	4.5 Gb	(ftp)(http)	BOWTIE
GSE174171_SP_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	8.5 Mb	(ftp)(http)	BW
GSE174171_SP_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	8.5 Mb	(ftp)(http)	BW
GSE174171_SP_PB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	54.2 Mb	(ftp)(http)	BW
GSE174171_SP_PB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	55.0 Mb	(ftp)(http)	BW
GSE174171_ST_MB6_all_R1.B6.bowtie.gz	1.8 Gb	(ftp)(http)	BOWTIE
GSE174171_ST_MB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	4.2 Mb	(ftp)(http)	BW
GSE174171_ST_MB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	4.2 Mb	(ftp)(http)	BW
GSE174171_ST_MB6_all_R1.CAST.bowtie.gz	1.8 Gb	(ftp)(http)	BOWTIE
GSE174171_ST_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	4.1 Mb	(ftp)(http)	BW
GSE174171_ST_MB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	4.1 Mb	(ftp)(http)	BW
GSE174171_ST_MB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	26.2 Mb	(ftp)(http)	BW
GSE174171_ST_MB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	26.4 Mb	(ftp)(http)	BW
GSE174171_ST_PB6_all_R1.B6.bowtie.gz	2.2 Gb	(ftp)(http)	BOWTIE
GSE174171_ST_PB6_all_R1.B6.specific.5prime.1bp.map2ref_minus.bw	5.5 Mb	(ftp)(http)	BW
GSE174171_ST_PB6_all_R1.B6.specific.5prime.1bp.map2ref_plus.bw	5.5 Mb	(ftp)(http)	BW
GSE174171_ST_PB6_all_R1.CAST.bowtie.gz	2.2 Gb	(ftp)(http)	BOWTIE
GSE174171_ST_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_minus.bw	5.4 Mb	(ftp)(http)	BW
GSE174171_ST_PB6_all_R1.CAST.specific.5prime.1bp.map2ref_plus.bw	5.4 Mb	(ftp)(http)	BW
GSE174171_ST_PB6_all_R1.identical.5prime.1bp.map2ref_minus.bw	28.7 Mb	(ftp)(http)	BW
GSE174171_ST_PB6_all_R1.identical.5prime.1bp.map2ref_plus.bw	29.0 Mb	(ftp)(http)	BW
SRA Run Selector
Raw data are available in SRA
Processed data are available on Series record

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