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Series GSE175657 Query DataSets for GSE175657
Status Public on Sep 27, 2023
Title CAG repeat expansion in the Huntington’s Disease gene correlates with defective linear and back-splicing [smallRNA-seq]
Organism Mus musculus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary small RNA profiling of mESC and NPC cells with various Htt genotypes
 
Overall design 2 biological samples per condition and cell type are used. A total of 24 samples were used: 12 for mESC cells (2 Htt KO, 2 Htt WT,2 Q20 Htt, 2 Q50 Htt, 2 Q92 Htt, 2 Q111 Htt) and 12 for NPC cells (2 Htt KO, 2 Htt WT,2 Q20 Htt, 2 Q50 Htt, 2 Q92 Htt, 2 Q111 Htt)
 
Contributor(s) Dassi E, Biagioli M
Citation(s) 37831730
Submission date May 27, 2021
Last update date Dec 28, 2023
Contact name Erik Dassi
E-mail(s) erik.dassi@unitn.it
Organization name University of Trento
Department CIBIO
Street address Via Sommarive, 9
City Trento
State/province TN
ZIP/Postal code 38123
Country Italy
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (24)
GSM5343363 smallRNA_Htt KO mESC replicate 1
GSM5343364 smallRNA_Htt KO mESC replicate 2
GSM5343365 smallRNA_Htt WT mESC replicate 1
This SubSeries is part of SuperSeries:
GSE175658 CAG repeat expansion in the Huntington’s Disease gene correlates with defective linear and back-splicing
Relations
BioProject PRJNA733154
SRA SRP321621

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE175657_rawcounts_genes.txt.gz 377.7 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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