NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE175681 Query DataSets for GSE175681
Status Public on May 28, 2021
Title The transcriptome and genome-wide mapping of Hif1α binding sites in kidney tubule cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Expression profiling by high throughput sequencing
Summary To understand the transcription regulation of HIF1α in kidney tubule cells, we stabilized HIF1α with 50μM FG-4592 in HK2 cells. We captured ChIPseq of HIF1α and constructed transcription profile under FG-4592.
 
Overall design Kidney tubule cell culture HK2 were subjected to ChIP-seq, RNA-seq.
 
Contributor(s) Wenju L, Aiping D, Jingping Y
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date May 27, 2021
Last update date May 30, 2021
Contact name Aiping Duan
E-mail(s) dongmu_1987@126.com
Organization name Jinling hospital
Street address zhongshan east road 305
City nanjing
ZIP/Postal code 210000
Country China
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (4)
GSM5343809 HIF1α _ChIPSeq_rep1
GSM5343810 HIF1α _ChIPSeq_rep2
GSM5343811 RNAseq rep1
Relations
BioProject PRJNA733188
SRA SRP321657

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE175681_RAW.tar 723.9 Mb (http)(custom) TAR (of BED, BW, GTF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap